Ruficoccus sp. ZRK36: K0V07_05535
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Entry
K0V07_05535 CDS
T07427
Name
(GenBank) ATP-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rufi
Ruficoccus sp. ZRK36
Pathway
rufi03420
Nucleotide excision repair
rufi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rufi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
K0V07_05535
03430 Mismatch repair
K0V07_05535
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rufi03400
]
K0V07_05535
Enzymes [BR:
rufi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K0V07_05535
DNA repair and recombination proteins [BR:
rufi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
K0V07_05535
MMR (mismatch excision repair)
Other MMR factors
K0V07_05535
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
AAA_12
Motif
Other DBs
NCBI-ProteinID:
QYY36938
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All DBs
Position
1262114..1264198
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AA seq
694 aa
AA seq
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MDFTGPSVSINDQFAPIDYARELNPQQLAAVQATDGPALVLAGAGSGKTRTLTYRVAWLL
EQGVWPGEILLLTFTNKAAREMLGRVEDLTGVPRWKFWGGTFHSIGQRSLRMHGEVVGIE
KGFTILDQGDAESLLGDVIRERDRTFLKNKDHPKARVVAEMISYARNTRQPLENVVLTRY
PWLEDILDTLLGFARGYAERKLRQQTLDYDDLLEYWLKMLETSEEARNHYQERFRHILVD
EFQDTNKLQGSIVNLLAAKRRNVMAVGDNWQCIYTWRGAEFGNMEDFAEVFPERTIYKIE
TNYRSSPQILSFANHMMGGHPSIPGYPLELQAHQPSKDRPYVLPCMDTRQQADLVIRRLE
GLREEGRSLKDVAVLYRAHYQAMDLQMELSRRGVPYTITSGVRFFEQAHIRDLVAHLRVV
SNPRDSAAFERMAMLLPKVGTVTAKKLFKLSHEIAEKERTSLVWAMLGDPVLKKVPEAAR
EEWKDLAQTLIDMERAMGGPSVAPPEKDEPDLFDHAEKQQPAETRVAATPQEIVRLAIEG
WYGDYLRNLYDNWQSRKDDLDSLVGFAARYEDMTELLAQLVLLNSETSDRRIDPDEETVK
LTTIHQSKGLEFPVVFVLGLSEGLLPLKRAIEEGDVEEERRLLYVAVTRAMEELYLCFPR
VTSSGGPPQILEPSRFLTAVSEEYYEVLRTGGGR
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atggattttaccggacccagcgtcagcatcaacgaccagttcgcgcctatcgattatgcc
cgtgagttgaacccgcagcaattggctgctgtgcaggcgacagatggcccggcgcttgta
ctggccggggcaggttctggcaagacgcgtacactgacctaccgggtggcctggctgctg
gagcagggcgtgtggcccggtgagatcttgctgctgacctttaccaataaggccgcccgc
gagatgctgggccgggtcgaggacttgaccggcgtgcctcgctggaagttctggggcggc
accttccactcgatcggtcagcggagcctgcgcatgcacggcgaggtggtcgggatcgag
aagggttttaccatccttgaccagggagatgccgagtcgctactgggagacgtcatccgc
gagcgggaccgtacctttctcaagaacaaggaccaccccaaggctcgcgtggtggccgag
atgatcagctatgcccgtaatacgcggcaaccgctggagaatgtcgtcctcactcgctac
ccgtggctggaggatattctcgatacgctgttgggctttgcgcgtggctatgccgagcgc
aaactgcgccagcagacgctcgattacgatgacttgctggagtactggctgaaaatgctg
gagaccagtgaggaggcccgtaaccactatcaggagcgcttccggcacatcctggtggac
gagtttcaggatacgaacaagttgcaggggagtatcgtgaacctgctcgcagccaagcgc
cgcaatgtaatggcggtgggtgacaactggcagtgcatctacacctggcgcggggctgag
tttgggaacatggaggacttcgccgaagtctttcccgagcgcacgatttacaagatcgag
acgaactaccgctccagcccgcaaatcctctcctttgccaaccatatgatgggcggccat
ccgtccatccccggctatccgctggagctacaggctcaccagccctccaaggatcggccc
tatgtgctgccctgcatggatacgcggcagcaggcggacctcgttatccgccgtctggag
gggctgcgcgaggaggggcgttcgctcaaggatgtggccgtactctaccgcgcgcactat
caggcgatggacctgcagatggagctctcccgacgcggcgtaccctacacgatcaccagt
ggcgtgcgtttcttcgagcaggcgcacatccgcgaccttgtagcgcacctgcgcgttgta
tccaatcctcgtgacagcgcggcctttgagaggatggctatgcttctgccgaaggtcggc
accgtgacggcgaaaaaacttttcaagctctcgcacgagatcgcggaaaaagagcgtacc
tcgctcgtttgggcgatgctcggtgatccggttttaaagaaagtccccgaggctgcccgc
gaggagtggaaggacctggcgcaaaccctgatcgacatggagcgagcgatgggtgggccc
tccgtcgccccgcccgagaaggacgagccggacctcttcgaccatgcggagaagcagcag
ccggcggagacgcgtgtagccgccactccgcaggagatcgtgcgcctcgctatcgagggg
tggtacggggactatctgcgcaacctgtacgacaactggcagagccgtaaggatgaccta
gacagtctggtcggctttgcggcccggtacgaggatatgaccgagctgctggcgcaactc
gtactgctcaattccgaaacgagcgaccgccggatcgaccccgatgaggaaacggtcaag
ctgaccacgatccaccaatcgaaggggctggagtttccggtggtctttgtgctcgggctc
tccgaggggctgctgccgctcaagcgcgcgatcgaggagggcgatgtggaggaagagcgc
cgtctgctctatgtggcggtcacgcgcgccatggaggagctgtacttgtgcttcccgcgg
gtgacgtcctccggtggtccgccacagattcttgagccctcgcgcttcctgaccgcagtg
tccgaggagtactacgaggtgctgcgcaccggcggtggtcgctga
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