Ruficoccus sp. ZRK36: K0V07_11485
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Entry
K0V07_11485 CDS
T07427
Name
(GenBank) PD-(D/E)XK nuclease family protein
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
rufi
Ruficoccus sp. ZRK36
Pathway
rufi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rufi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
K0V07_11485
09124 Replication and repair
03420 Nucleotide excision repair
K0V07_11485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rufi03021
]
K0V07_11485
03036 Chromosome and associated proteins [BR:
rufi03036
]
K0V07_11485
03400 DNA repair and recombination proteins [BR:
rufi03400
]
K0V07_11485
Enzymes [BR:
rufi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
K0V07_11485
Transcription machinery [BR:
rufi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
K0V07_11485
Chromosome and associated proteins [BR:
rufi03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
K0V07_11485
DNA repair and recombination proteins [BR:
rufi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
K0V07_11485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
PDDEXK_1
DEAD
ResIII
HBB
PhoH
Motif
Other DBs
NCBI-ProteinID:
QYY34921
LinkDB
All DBs
Position
complement(2607455..2609806)
Genome browser
AA seq
783 aa
AA seq
DB search
MMVHEEERRASLSITEFAQFQLGPRGGRAGAGGLWRMRTGVAWHQQIQQEDEAARPGVSS
EVAISGLWQHEGWTLHLHGRIDQVEETLQGWTLREIKTLEQRLPRPEADLRAAYPPYLCQ
LAAYVKLARVLPEFRGLPVSGELVFVEISEGLRQTLTLTEADEAIFDRQAETVCAFLNER
RQAATRRSGLVFKPAFETFRPEQTRALDDLAARAASARTLLLEAPTGFGKTGLVLQYALG
QLRDGMYDRLIYCTGKSTGQIQVDRQLRRMSDSPEALRTLVFRNRAEHAIATALHSCDAT
GGSCTENIEEAWAKSGIVPWELWQEDQPDLERVRLLGARTGVCPYEISKSLLPHADVWVG
DYNYVFSPWHQQVFLESAGFDPTRTLLVVDEAHNLASRVAALYSFGETAAGAHYLLGGLR
FEDASAKFIALLEEWADLLDSLRPRDSLSMSAEYEITELLERLAKSVYAERLPWDDLAPA
TTEALHRLPRLYAIMASEGLDRLCWSPNRGELRVSCLNAAGEIAARLESFGQSLLMSATL
SPLEDFCAETGLEPAAVNAVQAGAPWRDQAYTVAVDARVDTRLNARPRYYTTTAATVEAL
CAADDRPTAVFFPSYQYAETVRTYLAQTSPQLVVAMQPRGIDLNGQLHFIEESLLCAHAV
FFVLGSGFSEGIDELGGRIGQAMVVGPALPEVNAEQKARLERLEHLGRPEAFRRVYQLPA
MRKINQALGRLVRGPGQHARVLLHCRRFADTSYQRLLDPVFIPEATINSDAQLSEWLAAT
PAQ
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
atgatggtgcatgaggaagaacgccgcgcgagcctctcgatcaccgagttcgcgcagttc
cagcttggcccgcgtggcgggcgtgccggggccggtggcctctggcgcatgcgtaccggc
gtagcctggcaccagcagatccagcaggaggacgaggccgcgcggcctggcgtcagctcc
gaggtcgccatctccggactttggcagcacgagggctggaccctccacctgcacggacgc
attgaccaggtcgaggagaccctccagggctggaccctgcgcgagataaaaaccctggag
cagcgcctcccccgccccgaggccgacctgcgcgcggcctaccccccgtatttatgccag
ctggccgcctacgtaaagctcgcccgcgtgctgccggagttccggggcctgcccgtcagc
ggtgagctggtcttcgtcgagatcagcgaaggcctccgccagaccttgacattaaccgag
gccgatgaggcgatcttcgatcgacaggcggagacggtctgcgcctttctcaacgagcgt
cgtcaggccgccactcgccgttcaggccttgtcttcaagccggctttcgaaacctttcgc
cccgagcaaacccgtgccctggatgatctcgccgcgcgggcggcctccgcgcgcaccctc
ttgctggaggcaccgaccggcttcggtaagaccggactcgtcctgcaatacgcgctcgga
cagctccgcgacgggatgtacgaccggctcatttactgcactggcaagtccacgggccag
attcaggtggaccggcaactacgccgcatgagtgacagccccgaggctctgcgcacgctt
gttttccgtaaccgggccgagcacgccatcgccaccgccctgcattcctgtgacgccaca
ggtggctcctgcactgagaacatcgaggaggcctgggccaagagcggcatcgtcccctgg
gagctctggcaggaggaccagcccgacctggagcgcgtccgcctgctgggcgcgcgcacc
ggcgtatgcccctacgaaatctccaagagcctgctcccccacgccgatgtatgggtcggc
gactacaactacgtcttttccccctggcaccagcaggtgtttctggaaagcgcgggcttt
gacccgacacgcacgctgctcgtcgtggacgaggctcacaacctcgcctcccgcgtggcc
gccctctactcttttggtgaaaccgctgccggggctcattatctgctcgggggcctgcgc
tttgaggatgcctcggcgaaatttatcgcactgctggaggagtgggccgacctgctcgac
agcctccgcccgcgagacagcctcagcatgagcgccgagtatgagatcaccgagctgctg
gagcgcctggccaagagtgtttacgccgagcgcctcccctgggacgatctcgcccccgcc
accaccgaggccctccatcgcctgccgcgcctctacgcgatcatggccagcgaggggctg
gaccggctctgctggagcccgaaccggggtgagctgcgcgtctcctgcctcaatgctgcg
ggtgaaatcgccgcacgactggagagctttggccagagtctgctgatgtctgccacgctc
agcccgctggaggacttttgcgccgagacaggcctcgagcctgccgccgtcaacgccgtg
caggccggagccccttggcgagaccaagcctacaccgtcgccgtggacgcccgggtggac
acccgcctcaacgcccgcccccggtactacaccaccacggccgccaccgtagaggccctc
tgcgccgccgacgaccgccccaccgctgtctttttccccagctaccagtacgccgaaacc
gttcgcacctatctggcccagacgagccctcagctcgtagtggccatgcagccgcgcggc
atcgacctcaacggccagctccacttcatcgaggaaagccttctgtgcgcgcatgctgtc
ttcttcgtcctggggagcgggtttagtgagggcattgacgagctgggcgggcgtatcggg
caggccatggtggtcggccccgccctgcccgaggtcaacgccgagcaaaaagcccgtctg
gagcgcctggagcatctgggccgtccagaagcctttcggcgcgtctaccagctcccagcc
atgcgcaagatcaaccaggccctcgggcggctcgtgcgtggccccggccagcatgcacgc
gtcctgctgcactgccgtcgttttgccgacacctcgtaccagcgcctgctcgacccggtc
tttatccccgaagcgacgatcaacagcgacgctcagctcagtgaatggctggctgcgaca
cccgcccagtga
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