Ruficoccus sp. ZRK36: K0V07_14955
Help
Entry
K0V07_14955 CDS
T07427
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
rufi
Ruficoccus sp. ZRK36
Pathway
rufi02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
rufi00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
K0V07_14955 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rufi03021
]
K0V07_14955 (rpoD)
Transcription machinery [BR:
rufi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
K0V07_14955 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
Sigma70_r4_2
Cep57_MT_bd
Motif
Other DBs
NCBI-ProteinID:
QYY35584
LinkDB
All DBs
Position
3424393..3426117
Genome browser
AA seq
574 aa
AA seq
DB search
MSKKSTEATEPKKKASEKAQARLNDKIRVLIRQSKEQGYLTVQDINRVLPESVNNPEEIE
NVISILENLEIDILDSEEVEAYKQRVENEEEAESKNASMDILDDPVRMYLKQMGQVPLLT
REQEVSISKRIEKAEQKAADVLFSVGLTTLYQIDLAKKLIDREERFDRVVLDKKIDSREN
YFKGLPKQIELAEAAEAKCERAWADIQKHDDDSPNEKRAKTRLSKYESSLKPIFRKFCFK
LKVFEEFLDNLSPTLREIEDHLEHLKLANKVKSSRHRKHDPETIRKRLEDIKQMYRIEPE
ELLNLVREVRKNMREAHRAKTEMVESNLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAV
EKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETLNKVMQVQKQLLQELGH
EPTPEEVAIEMDLPVERVQAIMKMAQQPISLQSPVGDSDDTNFGDFIEDKGAENPYDMTA
YSLLREKIMDVLDSLTERERRVLSLRFGLQDGYSRTLEEVGRQFKVTRERIRQIEAKALR
KMRHPTRIRQLHGFFEGEIDTSGPGFDNFRRPGE
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atgtccaagaaatctaccgaagccaccgagccgaagaagaaggcgtctgagaaggcacaa
gcccgtctcaacgacaaaatccgggtgctcattcgccagtcgaaagaacaagggtacctg
accgtccaggacatcaaccgtgtcctgcctgaaagcgtcaacaaccctgaggagatcgag
aatgtcatctcgatcctcgaaaacctcgaaatcgacatcctcgactccgaagaggtcgag
gcctacaagcagcgcgtcgaaaacgaggaggaagccgagtccaagaatgccagcatggac
atcctggacgacccggtgcgcatgtacctcaagcagatgggccaggtgcccctgctcacc
cgcgagcaggaggtctccatctccaagcgcattgaaaaggccgagcagaaggccgccgac
gtgctcttctccgtcggcctgaccaccctttaccagatcgatctggccaagaagctcatc
gaccgcgaagagcgctttgaccgcgtcgtgctcgacaagaagatcgacagccgcgagaac
tacttcaagggcctgcccaagcagatcgagctcgccgaggccgccgaggccaagtgcgaa
cgcgcctgggccgacatccagaagcacgatgacgactcccccaacgagaagcgcgccaag
acccgcctctccaagtacgagtcctccctcaagccgattttccgcaagttctgcttcaag
ctgaaggtctttgaagagttcctggacaacctctctcccaccctgcgcgagatcgaggac
cacctggagcacctcaagctcgccaacaaggtcaagtccagccgccaccgtaagcacgac
cccgagaccatccgcaagcgcctcgaagacatcaagcagatgtaccgcatcgagcccgag
gagctgctcaacctggtccgcgaagtccgcaagaacatgcgtgaggcccatcgcgccaag
accgagatggtcgagagtaacctgcgcctcgtgatttcgatcgccaagaagtacaccaac
cgcggcctgtccttcctcgatctcattcaagagggtaacatgggcctgatgaaggccgtt
gagaagttcgagtaccgccgcggttacaagttctccacctatgccacgtggtggatccgc
caggccatcacccgctcgatcgccgaccaggcccgcaccatccgtatcccggtgcacatg
atcgagaccttgaacaaggtcatgcaggtgcagaagcagctcctccaggagctcggccac
gagcccacccccgaggaggtcgccatcgagatggacctgccggtcgagcgtgtccaggcc
atcatgaagatggcccagcaaccgatttccctgcaaagccccgtcggcgactccgacgac
accaacttcggtgacttcatcgaggacaagggcgcggaaaacccctacgacatgaccgct
tactcgcttctgcgcgagaagatcatggacgtgctcgactccctcacggagcgcgagcgc
cgggtgctctccctgcgcttcggcctgcaggacggctacagccgcaccctcgaagaggtc
ggccgccagttcaaggtcactcgcgagcgtatccgccagatcgaggccaaggccctgcgc
aagatgcgtcacccgacgcgtatccgccagctccacggcttctttgagggcgagatcgac
acctccggtcccggctttgacaacttccgtcgccccggcgagtaa
DBGET
integrated database retrieval system
