Ruficoccus sp. ZRK36: K0V07_15220
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Entry
K0V07_15220 CDS
T07427
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rufi
Ruficoccus sp. ZRK36
Pathway
rufi03030
DNA replication
rufi03430
Mismatch repair
rufi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rufi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
K0V07_15220 (dnaE)
03430 Mismatch repair
K0V07_15220 (dnaE)
03440 Homologous recombination
K0V07_15220 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rufi03032
]
K0V07_15220 (dnaE)
03400 DNA repair and recombination proteins [BR:
rufi03400
]
K0V07_15220 (dnaE)
Enzymes [BR:
rufi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
K0V07_15220 (dnaE)
DNA replication proteins [BR:
rufi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
K0V07_15220 (dnaE)
DNA repair and recombination proteins [BR:
rufi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
K0V07_15220 (dnaE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HHH_3
tRNA_anti_2
DUF655
Motif
Other DBs
NCBI-ProteinID:
QYY35635
LinkDB
All DBs
Position
3482134..3485886
Genome browser
AA seq
1250 aa
AA seq
DB search
MSKDKEFVHLHVHTDYSLLDGCSRVDRLCKRAEELGMKALSVTDHGVLFGLASFFKTAKK
YGIKPLLGCEIYLVYDDHLGATNEERAKQKSYHMGLLARNFQGYQNLTRLVSKGHTEGFY
RNPRVSLTDLAEHKEGLIGFSGCLAAVIPQMLMKGDYEAAREACGTFVDMFGKDYFIVEL
MDHGLKEQQSIIPDLLKLAGEFDLKVVCTNDVHYVNATDHRPHDSLLCIQTGARVSEENR
LRYGSQQFYLKSREEMEKVFRERPDSLINTSAVAEMCDVKLPFGEDHYPVFERPIETVYQ
PDAKNFDRVLDIYVERKNTVLTREGDDPISLDEEAREKFRANGLYLFDLCKKGLKERYGV
NYDEVRQLVENGKLLDGDEEKHKQALRLCEQLEYELAIITGTGFVDYFLIVWDFIKWARD
RGIPVGPGRGSGAGCMVAYVLKITDIDPFRFGLLFERMLNLERVSPPDFDVDFCMRRRDD
VVNYVRDKYGRDRVANIITFGTFGAKMIVRDLARVNDLPFAEGDKLAKMIPDELNISLDD
AVAKSGELQSEIKHNPIAKTIIEEGKVIEGMVRNTGKHACGVIIADQPITNLIPVTLQEG
DLTTQYPKGPSEDLGLLKMDFLGLKTLTVIADAQENVRQLPGQENFDIEKVSLEDPATFQ
LLKDAKTVGVFQLESGGMQALCRQLETSSIDEIVALIALYRPGPMQFIPQYIKGKKDPST
MQVPHPLLKDLVEETYGVLVYQEQVMQSAQIIAGYTLGGADILRRAMGKKIKEVMDAQKD
IFIKGAKETNNIERKKAEEIFGILEKFAQYGFNKSHSAAYAMLSYRTAFLKANFPCQFMA
AVLSSELGNADKVSHFIEECESLDIEVLGPDINESGLMFTPVKDESEDAEAAWSIRFGLA
AIKGVGDAAARIILEERDKAGPFTDFHDFITRTADAAVNRRVVECLVKTGAFDFCGLDRG
HLLAAVEQVINEVADLARDRAAGQANMFDMLMDDSGGSDEDSGGGHSAIRTDGPAMPMAE
KLQYEKELLGFYVSGHPMNDFHGLDDTINNLLPGEDLKLCDRQSFRMCGVALNINKRLTR
KDNRPWAFFTLATRKAYYQINVFPDAFERYAPLLAEEGQIVLVEGEIRHDEERGETRLNA
SYMAALTPETASAYITTATLYASPEEKPLADLANFLRELVDKNESGGTKLRLAVMVNEDE
ALYFESPDYVACRLVPTLYDKLRKHPAIRRILLDSRPLREPERPKWMKKG
NT seq
3753 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaagacaaagaattcgtccacctgcacgtccacaccgattacagcctgctcgac
gggtgcagccgcgtggaccggctctgcaagcgggcggaagagctgggcatgaaggccctc
tcggtcacggaccacggggtgctctttgggctggcgagcttctttaagactgcgaaaaag
tacggcatcaagcctctgctgggctgcgaaatctacctcgtctacgacgaccacctcggc
gccaccaacgaggaacgcgccaagcagaagagctaccatatgggcttgctggcgaggaac
ttccagggctaccagaacctgacccgcctcgtctccaagggccacaccgagggcttttac
cgtaacccgcgggtatccctgaccgatctggccgagcataaggaggggttgatcgggttc
agcggctgtctggccgccgtcatccctcagatgctgatgaagggcgactacgaggccgcg
cgcgaggcctgcggcacgttcgtggacatgttcggcaaggattatttcatcgtcgagctg
atggaccacgggctcaaggagcagcagtcgatcatccccgacctgctcaagctggccggg
gaatttgaccttaaggtcgtgtgcaccaacgacgtgcactacgtcaacgccaccgaccac
cgcccgcacgactcgctcctgtgcatccagaccggcgcccgcgtctccgaggagaaccgc
ctgcgctacggctcccagcagttttacctgaaaagccgcgaggagatggagaaggtcttc
cgggagcggcccgactcgctgatcaacacctcggccgtggccgagatgtgcgacgtcaag
ctgccctttggcgaagaccactacccggttttcgagcggccgatcgagaccgtttaccag
cccgacgcgaagaactttgaccgcgtgctggacatctatgtcgagcgcaagaacactgtc
ctcacccgcgagggggacgacccgatcagcctcgacgaggaggcccgggaaaagtttcgc
gccaacggcctctacctctttgacctctgcaaaaagggcctgaaggagcgctacggcgtc
aactacgacgaagtccgccagctggtcgagaacggtaagctcctcgacggcgacgaggaa
aagcataagcaggcgctcaggctctgcgagcagcttgagtacgagctggccatcatcacg
ggcacgggcttcgtggactacttcctgatcgtttgggactttatcaagtgggcgcgcgac
cggggtatcccggtcgggccaggccgtggctcgggcgcgggctgcatggtcgcctacgtt
ctcaagatcaccgacatcgaccccttccgcttcgggctgctcttcgagcgtatgctgaac
ctcgagcgcgtctccccaccggacttcgacgtggacttctgcatgcgccgccgcgacgac
gtggtcaactacgtgcgcgacaagtacgggcgcgaccgcgtggccaacatcatcaccttc
ggcaccttcggggcgaaaatgatcgtgcgcgatctggcgcgcgtcaacgacctgcccttc
gccgagggtgacaagctcgccaagatgatccccgacgagctgaatatctctctcgacgac
gccgtggccaagtccggcgagctccagagcgagatcaagcacaacccgatcgccaagacg
atcatcgaggagggcaaggtcatcgagggcatggtccgcaacaccggtaagcacgcctgc
ggcgtcatcatcgccgaccagccgatcaccaacctcatccccgtcaccctgcaggaaggc
gacctcaccacccagtacccgaaggggccgagcgaggacctgggcctgctgaagatggac
ttcctcgggctgaagacgctgaccgtcatcgccgacgcgcaggaaaacgtccgccagcta
ccggggcaggaaaactttgacatcgaaaaggtcagcctggaggaccccgctaccttccag
cttctgaaggacgccaagaccgttggcgtgtttcagctggagtccggcggcatgcaggca
ctctgccgtcagctggagaccagcagcatcgacgagatcgtggcgcttatcgcgctgtac
cggcccggcccgatgcagtttatcccacagtacatcaagggtaagaaggacccctcgacc
atgcaggtcccccacccgctcctgaaggatctggtcgaggaaacctatggcgtgctcgtc
tatcaggagcaggtcatgcagtcggcccagatcatcgccgggtacaccctgggcggcgcg
gacatcctccgccgcgccatgggtaagaagatcaaagaggtcatggacgcccagaaggac
atctttatcaagggcgcgaaggagaccaacaacattgagcgcaagaaggcggaggaaatc
ttcggcatcctggagaagttcgcgcagtacggttttaacaaatcgcactcggcggcctac
gcgatgctcagctaccgcacggccttcctcaaggcgaacttcccctgccagttcatggcc
gccgtgctctcctccgagctcggcaacgccgacaaggtctcccacttcatcgaggagtgc
gagagcctcgacatcgaggtgctcggccccgacatcaacgagtcgggcctcatgttcact
ccggtgaaggacgagtccgaggacgcagaggcggcctggagcatccgcttcggcttggcc
gccatcaagggcgtgggcgacgcagccgcgcgcatcattctggaggagcgcgacaaggct
ggccccttcaccgactttcacgattttatcacccgcaccgccgacgccgccgtcaaccgc
cgcgtggtcgagtgtctggtcaagaccggcgccttcgacttctgcgggctggaccgcggg
cacctcttggctgccgttgagcaggtgatcaacgaggtggctgacctcgcccgcgaccgc
gccgccggccaggcgaatatgtttgatatgctgatggacgacagtggcggcagcgacgag
gactccggcggtggccacagcgccatccgcactgatgggcccgccatgcccatggccgaa
aagctccagtacgaaaaggagctgctgggcttctatgtctccggccacccgatgaacgac
ttccatgggctcgacgacacgatcaacaaccttctccccggtgaggacctcaagctgtgt
gaccgccagagcttccgcatgtgcggcgtcgcgctcaatattaacaagcgactcacccgc
aaggacaaccgcccctgggcattctttaccctggccacccgcaaggcctactaccagatc
aacgtcttccccgatgcctttgagcgctacgcgcccctgctggccgaggaggggcagatc
gtgctcgtcgagggcgagatccggcacgacgaggagcgcggcgagacccggctcaatgcc
agctacatggcggcgctcacccccgagacggcttcggcctacattaccacggctacgctc
tatgccagcccggaggaaaaaccgctggccgacctggcaaacttcctgcgcgaactggtg
gacaaaaacgaaagcggcggcaccaagctgcgtctcgccgtcatggtcaacgaagacgag
gccctctacttcgagagccccgactacgtcgcctgccgcctcgtccccaccctctacgat
aagcttcgcaagcatcccgccatccgacgcatcctgctcgactcgcgccctctgcgcgag
cccgagcgccccaagtggatgaaaaagggatag
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integrated database retrieval system
