Rugamonas sp. DEMB1: QC826_02905
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Entry
QC826_02905 CDS
T08988
Symbol
rfbB
Name
(GenBank) dTDP-glucose 4,6-dehydratase
KO
K01710
dTDP-glucose 4,6-dehydratase [EC:
4.2.1.46
]
Organism
rug
Rugamonas sp. DEMB1
Pathway
rug00521
Streptomycin biosynthesis
rug00523
Polyketide sugar unit biosynthesis
rug00541
Biosynthesis of various nucleotide sugars
rug01100
Metabolic pathways
rug01110
Biosynthesis of secondary metabolites
rug01250
Biosynthesis of nucleotide sugars
Brite
KEGG Orthology (KO) [BR:
rug00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
QC826_02905 (rfbB)
09109 Metabolism of terpenoids and polyketides
00523 Polyketide sugar unit biosynthesis
QC826_02905 (rfbB)
01055 Biosynthesis of vancomycin group antibiotics
QC826_02905 (rfbB)
09110 Biosynthesis of other secondary metabolites
00521 Streptomycin biosynthesis
QC826_02905 (rfbB)
00525 Acarbose and validamycin biosynthesis
QC826_02905 (rfbB)
Enzymes [BR:
rug01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.46 dTDP-glucose 4,6-dehydratase
QC826_02905 (rfbB)
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Motif
Pfam:
GDP_Man_Dehyd
Epimerase
3Beta_HSD
Polysacc_synt_2
RmlD_sub_bind
NAD_binding_4
adh_short
Motif
Other DBs
NCBI-ProteinID:
WGG51248
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All DBs
Position
631559..632632
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AA seq
357 aa
AA seq
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MIFVTGGAGFIGSNFVLDWLAQSDEAVLNFDKLTYAGNLNNLASLKRDERHLFVRGDICD
KDTVLALLLEHRPRAIVHFAAESHVDRSILGPGEFINTNINGTFSLLEAARAYWGGLAEA
EQAAFRFLHVSTDEVYGTLGPDDAPFSETTAFAPNSPYSASKAASDHLVRSYHHTYGLPT
VTTNCSNNYGPYHFPEKLIPLIIANAQAGKPLPIYGDGQQVRDWLYVSDHCAAIRRVLAE
GRLGETYNVGGWNEMANLDVVHTLCDLLDQLKPRADGASYRAQISYVKDRPGHDRRYAID
ARKLERELGWKPAETFQSGIAKTVQWYLDNQEWVADVQSGGYANWVAANYFNRENPQ
NT seq
1074 nt
NT seq
+upstream
nt +downstream
nt
atgatttttgtgacaggcggggctggtttcatcggttcgaatttcgtgctcgactggctg
gcgcagtccgacgaggcggtgctgaatttcgataaattgacgtacgcgggcaatctgaac
aatcttgcctcgctgaagcgcgacgagcgccacttgttcgtgcgcggcgacatctgcgac
aaggacacggtgctggccctgttgctggagcaccggccgcgcgccatcgtccacttcgcg
gcggagagccacgtcgaccgctccatcctcgggccgggcgagttcatcaacaccaacatc
aacggcaccttcagcctgctcgaggcggcccgcgcctactggggcggcctggccgaggcg
gagcaggcggcgttccgcttcctgcacgtctccaccgacgaggtgtacggcacgctgggg
ccggacgacgcgccgttcagcgagaccaccgcgttcgcgccgaacagcccgtactcggcc
tcgaaggcggcctccgaccacctggtgcgctcctaccaccacacctacggcctgccgacg
gtgacgaccaactgctcgaacaactacggcccctaccacttcccggaaaagctgatcccg
ctgatcatcgccaacgcccaggccggcaaaccgctgcccatctacggcgacggccagcag
gtgcgcgactggctgtatgtgagcgaccactgcgcggcgatccgccgggtgctggcggag
ggccgcctgggcgagacctacaacgtgggcggctggaacgagatggccaacctcgacgtg
gtgcacaccctgtgcgacctgctcgaccagctcaagccgcgcgccgacggcgccagctac
cgcgcccagatcagctatgtgaaggaccgtcccggccacgaccgccgctacgccatcgac
gcgcgcaagctggagcgcgaactgggctggaagccggccgagaccttccagagcggcatc
gccaagaccgtccagtggtatctggacaaccaggaatgggtcgccgacgtgcagtcgggc
ggctacgccaactgggtcgccgccaactatttcaaccgggagaacccacaatga
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