Rugamonas sp. DEMB1: QC826_03785
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Entry
QC826_03785 CDS
T08988
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rug
Rugamonas sp. DEMB1
Pathway
rug03030
DNA replication
rug03430
Mismatch repair
rug03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rug00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QC826_03785 (dnaE)
03430 Mismatch repair
QC826_03785 (dnaE)
03440 Homologous recombination
QC826_03785 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rug03032
]
QC826_03785 (dnaE)
03400 DNA repair and recombination proteins [BR:
rug03400
]
QC826_03785 (dnaE)
Enzymes [BR:
rug01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
QC826_03785 (dnaE)
DNA replication proteins [BR:
rug03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
QC826_03785 (dnaE)
DNA repair and recombination proteins [BR:
rug03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
QC826_03785 (dnaE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
Kinetochor_Ybp2
BING4CT
Motif
Other DBs
NCBI-ProteinID:
WGG51398
LinkDB
All DBs
Position
807764..811315
Genome browser
AA seq
1183 aa
AA seq
DB search
MNMVANEQDNAASAPAAVAGGPAFVHLRVHSEYSIVDGLVRIDDLISAAAKDKQAALAMT
DLSNLFGMVKFYKSARGKGIKPVVGVDVWISNDDNRDKPSRLLLLAKNRMGYLQLCELLS
SAFLTNQYKGRAEVRMEWLQALTTNTYELLPGENPADGLIALSGAHFGDVGIAIENGNLA
LAERHAQKWAAIFPGHFYLEIQRAGQANQEAQVRHAVALAAKLGLPVVATHPVQFISPDE
YIAHEARTCIAEGEMLANAKRVRRFNESMRFQTQAEMAERFADLPAALANSVEIAKRCNL
TLTLGKPQLPNFPTPDGMSIDEFLVAESKAGLEKRLLELYADPERREKERPRYEARLKFE
TDTICNMKFPGYFLIVAEFIQWAKENGVPVGPGRGSGAGSLVAYSLLITDLDPLKYNLLF
ERFLNPERVSMPDFDIDFCQEGRDRVIQHVKDLYGKEAVSQIATFGTMAAKGAIRDVGRV
MDFGYNFCDGVSKLIPFKPGKPVTIADAIEEEPMLKERQENEEEVAQLLELAQQVEGITR
NIGMHAGGVLIAPGKLTDFCPLYTQGGDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILD
RAVRYIKLLDPKESEFDLAKLPLNDRPSYDLLTKAKTVAVFQLESRGMQGMLKDARPDRF
EDIIALVALYRPGPMDLIPDFCKRKHGEKFDYPDPRTESILSETYGIMVYQEQVMQMAQI
VGGYSLGGADMLRRAMGKKKAEEMAEHRQIFRDGAAKDGLSTAKADEIFDLMEKFAGYGF
NKSHAAAYALLSYHTAYLKAHHPAAFMAANMSLAMDDTDKVKILVEDCIDICGLTLLPPD
INKSDYRFMPDGPPPSVTGKKVTQIRYGLGAVKGSGQSAIEAIIAARSAGGPFTSLFDFC
KRVDKKQINRRTIESLIRSGAFDCLGIDRAILLASVAFAMECADQELKAANQVSLFGGDD
SDLVAPPEYVKCAPFSDRQKLAEEKIALGFYLSGHMFDSFAPEARRFARTKLAELEPSRE
PRMLCGVITGIRPQMTQRGKLLIVTLDDKSAVVEVTIYSEVYEENKKIIKEDEFLAVVGK
VSEDRFSGGLRISAEKVFDIVAARIQYGRQLGLALPATLDSRKIAEVLAPHRSESGLPVQ
ARINTQGVACVLQLGEAWCVAPSDELTLALQQQLGATEVAIEY
NT seq
3552 nt
NT seq
+upstream
nt +downstream
nt
atgaacatggtagcaaacgaacaagacaacgcggcctccgcccctgcggccgtggccggc
ggcccggccttcgtccacctgcgggtgcactccgagtactcgatcgtcgacggcctggtg
cgcatcgacgacctgatctcggccgccgccaaggacaaacaggcggcgctggcgatgacc
gacctgtccaacctgttcggcatggtcaagttctacaagtcggcgcgcggcaagggcatc
aagccggtggtcggcgtcgacgtctggatcagcaacgacgacaaccgcgacaagcccagc
cgcctgctgctgctggccaagaaccgcatgggctatctgcagctgtgcgagctgctgtcg
tcggccttcctgaccaaccagtacaagggccgcgccgaggtgcgcatggagtggctgcag
gcgctgaccaccaacacctacgagctgctgcccggcgagaacccggccgacggcctgatc
gcgctgtccggcgcccacttcggcgacgtcggcatcgccatcgagaacggcaacctggcg
ctggccgagcgccacgcgcagaagtgggcggcgatcttccccggccacttctacctggag
atccagcgcgccggccaggccaaccaggaggcccaggtgcgccacgccgtggcgctggcg
gccaagctgggcctgccggtggtggcgacccatccggtgcagttcatctcgcccgacgaa
tacatcgcccacgaggcgcgcacctgcatcgccgagggcgagatgctggccaacgccaag
cgggtgcgccgcttcaacgagtcgatgcgcttccagacccaggccgaaatggccgagcgc
ttcgccgacctgccggcggcgctggccaactcggtggagatcgccaagcgctgcaacctc
acgctcacgctgggcaagccgcagctgcccaacttccccacgccggacggcatgagcatc
gacgagttcctcgtcgccgagtccaaggccggcctggagaagcgcctgctcgagctgtac
gccgacccggagcggcgcgagaaggagcggccgcgctacgaggcgcgcctgaagttcgag
accgacaccatctgcaacatgaagttccccggctacttcctgatcgtggccgagttcatc
cagtgggccaaggagaacggcgtgccggtcggaccgggccggggttccggcgccggctcg
ctggtggcctactcgctgctgatcaccgacctggacccgctcaagtacaacctgctgttc
gagcgtttcctcaaccccgagcgggtctccatgcccgacttcgatatcgacttctgccag
gaggggcgcgaccgcgtcatccagcacgtcaaggacctgtacggcaaggaggcggtgtcg
cagatcgccaccttcggcaccatggcggccaagggcgcgatccgcgacgtcggccgcgtg
atggacttcggctacaacttctgcgacggcgtctccaagctgatcccgttcaagccgggc
aagccggtgaccatcgccgacgccatcgaagaggagccgatgctcaaggagcgccaggag
aacgaggaggaggtggcccagctgctcgaactggcgcagcaggtcgagggcatcacccgc
aacatcggcatgcacgccggcggcgtgttgatcgcgccgggcaagctgaccgacttctgc
ccgctgtacacccagggcggcgacggcggcgtggtgtcgcagtacgacaaggacgacgtg
gaggccgtcggcctggtcaagttcgactttttgggtttgaccacgctgaccatcctcgac
cgcgcggtgcgctacatcaagctgctcgatccgaaggagtccgagttcgacctggccaag
ctgccgctcaacgaccgtccctcctacgacctgctgaccaaggccaagaccgtggccgtg
ttccagctggagtcgcgcggcatgcagggcatgttgaaggacgcccggcccgaccgcttc
gaggacatcatcgccctggtggcgctgtaccgtccgggcccgatggacctgatccccgac
ttctgcaagcgcaagcacggcgaaaagttcgactatcccgatccgcgcaccgagtccatt
ctgtccgagacctacggcatcatggtctaccaggagcaggtgatgcagatggcgcagatc
gtcggcggctactcgctgggcggcgccgacatgctgcgccgcgcgatgggcaagaagaag
gccgaggaaatggccgagcaccgccagatcttccgcgacggcgccgccaaggacggtttg
agcaccgccaaggccgacgagatcttcgacttgatggagaagttcgccggctacggcttc
aacaaatcgcacgccgccgcctacgcgctgctgtcctaccacacggcgtatttgaaggcg
caccacccggccgcgttcatggcggccaacatgtcgctggcgatggacgacaccgacaag
gtgaagatcctggtcgaggactgcatcgacatctgcggcctgacgctgctgccgccggac
atcaacaagtccgactaccgcttcatgccggacggcccgccgccctcggtgacgggcaag
aaggtcacgcagatccgctacggcctcggcgcggtgaagggttcggggcagagcgcgatc
gaggcgatcatcgccgcgcgcagcgccggcgggccgttcaccagcctgttcgacttctgc
aagcgggtcgacaagaagcagatcaaccgccgcaccatcgagtcgctgatccgcagcggc
gccttcgactgcctcggcatcgaccgcgccatcctgctggccagcgtggccttcgccatg
gagtgcgccgaccaggagctgaaggcggccaaccaggtcagcctgttcggcggcgacgac
agcgatctggtggcgccgcccgagtacgtcaagtgcgcgcccttcagcgaccggcagaag
ctggccgaggagaaaatcgcgctcggcttctacctgtcgggccacatgttcgactcgttc
gcgccggaggcgcgccgcttcgcccgcaccaagctggccgagctggagccgtcgcgcgag
ccgcgcatgctgtgcggcgtgatcaccggcatccggccgcagatgacgcaacgcggcaag
ctgctcatcgtcaccctggacgacaagagcgcggtggtcgaggtgaccatctattccgag
gtgtacgaggagaacaagaagatcatcaaggaggacgagttcctcgccgtggtcggcaag
gtgtcggaggaccgcttctcaggcggcctgcgcatctcggccgagaaggtgttcgacatc
gtcgccgcgcgcatccagtacggccgccagctcggcctggcgctgccggccacgctggac
agccgcaagatcgccgaggtgttggcgccgcaccgctccgagtccggcctgccggtgcag
gcgcgcatcaacacccagggcgtggcctgcgtgctgcagctgggcgaggcctggtgcgtg
gcgccgtccgacgagctgaccctggcgctgcagcagcagctgggcgccaccgaggtggcc
attgagtactag
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integrated database retrieval system
