KEGG   Rugamonas sp. DEMB1: QC826_04415
Entry
QC826_04415       CDS       T08988                                 
Name
(GenBank) UvrD-helicase domain-containing protein
  KO
K03658  DNA helicase IV [EC:5.6.2.4]
Organism
rug  Rugamonas sp. DEMB1
Brite
KEGG Orthology (KO) [BR:rug00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rug03400]
    QC826_04415
Enzymes [BR:rug01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     QC826_04415
DNA repair and recombination proteins [BR:rug03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    QC826_04415
SSDB
Motif
Pfam: UvrD-helicase AAA_19 UvrD_C Zn_ribbon_Top1 UvrD_C_2 Helicase_IV_N AAA_12 AAA_30 Viral_helicase1 ResIII PhoH Zn_ribbon_8
Other DBs
NCBI-ProteinID: WGG53381
LinkDB
Position
969428..972214
AA seq 928 aa
MWSSSRMGERFTRTSEWTLLINGPELIVHREGRKYKASLTDEEAVSATPGFFWSSVDFKT
LDGKFILLDGIPNERAVAMTAAIKTAYSQFTAGEKKRSKLDEFDRLLAPLVSWRQIVVQD
FENHKSNHRWIAEETLQGWDAVRPAVVGKDAERFSALLRDVEVAEYFSGKDQGTKYAVDL
WKADLRPTVIKRNEEHFQAELIACKDFFNKVEKSPLTEEQVRSVVCFDNRVLTIASAGSG
KTSTMVAKAAYALLRKFVSADKILLLAFNKDAAEELQQRVYDRLTPLGFPADAVVARTFH
AFGLDVIGKATGRRPSLAAWLDNGKDIEHLADLIDDLKDKDSLFRTKWDLFRIVLSRDLP
QFGKEEEDTEDRDRNTKKYGFRTLRNEVVKSHGERMIADWLFYNGVDYRYEQPYEHDTAT
ESHRQYNPDFYYPDVDLYHEHFAFDHNGNPPPQFKGYMDGVKWKRGLHKQHKTALIETTS
VQLRTGKAFAILEAELTKRGIVLDPNPERPAEGRKPIGHEDLVKVFRTFLTHAKSNRLTD
ADLRQRLHSQTVGNFVYRHELFLDIFVEVRKAWENSLADGRCIDFEDMLNLASDHMDAGR
WQSPYTLVMVDEFQDASWARARLTRALVCKPGRFLFAVGDDWQSINRFAGSDISVMTKFE
EWFGRAITVRLERTFRCPQSLCDVSSKFVLKNPSQISKKVHSLEAEHPPAVELFQVDDDE
KLQDSIDKFLAGLHKKIVHGDVVPPKKGKKISVFILGRYKVDKKYIPDDWEKKYGAHLEL
KFSSVHGSKGLEADYVILPRVVSGYYSFPSTIEDDPVLQLAMPSEDTYAFGEERRLFYVA
LTRARRSATIFTVEGRMSPFVVELINDIKLEVQGIDGKKSKTVPCPKCGQGTLTKKTGPY
SDFFGCTRFPRCDYKQKIQEKKKSVQMV
NT seq 2787 nt   +upstreamnt  +downstreamnt
atgtggagttcgagcaggatgggcgagcggttcaccagaacctcggaatggacgcttttg
atcaatggtcctgagctgatcgttcatcgggaaggacgcaagtacaaggccagccttacg
gacgaagaggcggttagcgccacgcctgggttcttctggtcgtctgtggatttcaagacc
ctcgacggtaagtttattttattggacggtatccccaatgagcgtgccgttgcaatgact
gcggccattaagacagcatattcccaattcacggctggcgagaagaagcgaagcaagctt
gatgaatttgaccggctgcttgccccgctggtgtcatggcgccaaatcgtggttcaagat
tttgagaaccacaagtcaaaccatcgttggattgctgaggaaactttgcaggggtgggac
gcggttcggcctgctgtggttggtaaagatgctgaacgattctcagccctgttgagggat
gtggaggtagccgagtacttcagtggaaaggatcaaggcacaaaatatgctgtggattta
tggaaggctgacctgcgccccacggtcattaagcgcaatgaagagcacttccaggctgaa
ctgatcgcctgcaaagacttcttcaataaagtcgaaaagtctcccctaaccgaagagcag
gtcaggtctgtggtctgctttgataaccgtgttctaactatcgcgtcggcgggatctggc
aagacttcaacgatggtggccaaggctgcatatgctttgctccgtaagtttgtcagcgcc
gacaaaattcttctgctagccttcaataaagacgcagccgaagaacttcaacagagggtt
tatgatcgcttaacgcctctcggcttccccgctgatgctgtggttgcccgtaccttccat
gccttcggcttggatgtcatcggcaaggcgactggacgtaggcccagcttggccgcatgg
ctggataatggcaaagacattgaacacctggcagatttgattgatgacttgaaggacaag
gattccttatttaggacgaagtgggatctgtttcgcatcgtcctgagtcgggacttgccc
caattcggaaaagaggaagaggacacagaagatagggatcgcaatacgaagaagtatggc
ttccgcacgcttcgcaatgaagtggtgaagagccacggtgagcgcatgattgcggactgg
cttttctataacggtgtggactatcgctatgaacagccatatgaacacgatacggccaca
gaatcgcaccggcagtacaaccctgatttctactaccccgatgtggatctctaccatgag
catttcgcttttgatcacaatgggaatcctccaccacagttcaaaggctacatggatggt
gtgaagtggaagcgggggctgcacaagcagcacaagacagcactcattgaaacgacttcg
gtccagctccgaactggtaaagcctttgccatccttgaggctgaactgacgaagcgtggt
attgtgcttgatcccaatcctgaacgtccagcagaaggccgtaagcccattggccatgaa
gacctggtgaaggtgttcaggacgttcctgacccatgctaagagcaaccggcttaccgat
gctgatttgcgccagcgacttcacagccagacagtgggcaacttcgtttatcgtcatgaa
ctgttcttggatatctttgtggaggttcgcaaagcttgggaaaacagcttggctgatggt
cgctgcattgactttgaggacatgttgaatctggcctcggatcacatggacgcgggccgc
tggcaatccccttatacgctggtgatggtcgatgaattccaagatgcttcatgggctcgc
gcaaggctcacacgggcgcttgtctgtaagcccgggcgcttcctgttcgctgttggtgat
gactggcagagcatcaatcgatttgctggctctgacatttcggtgatgacgaagtttgag
gaatggtttgggcgtgctatcactgttcggcttgagcgtaccttccgttgccctcagtcc
ctgtgtgatgtgtccagcaagttcgttctcaagaatccttcgcagatttctaaaaaggtg
cactcgctggaagctgaacatcctcctgcagttgaactgttccaagtggatgatgatgag
aagctacaggatagcatcgacaagtttttggctggcctgcacaagaaaatagtccatggt
gatgtggtgccgcccaaaaaaggcaagaagatttcagtattcatcttggggcgctacaag
gtggataagaagtacatccccgacgattgggagaagaaatacggtgctcaccttgaactg
aaattctcaagtgtgcatggatctaaaggattggaagctgattacgtgattttgccgcgt
gtggtcagcggctactactctttcccaagcaccattgaagatgaccctgttcttcaactt
gcgatgccatcagaggatacctatgccttcggtgaagagcgtaggctgttctatgtggct
ctgactcgcgcgcggcgttctgcgaccatcttcactgttgaaggccgcatgtcgccgttc
gtcgtggagctgattaacgacatcaagcttgaagtacaaggcattgatggcaaaaagtct
aagacagtcccgtgtccgaaatgtggtcaaggaacgctgacgaaaaaaaccggcccgtat
tcggatttctttggctgtactcgattcccacggtgcgattataaacagaagattcaggaa
aagaagaagtccgtgcaaatggtttaa

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