Rugamonas sp. DEMB1: QC826_07355
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Entry
QC826_07355 CDS
T08988
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
rug
Rugamonas sp. DEMB1
Brite
KEGG Orthology (KO) [BR:
rug00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
rug03009
]
QC826_07355 (rlmD)
Enzymes [BR:
rug01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
QC826_07355 (rlmD)
Ribosome biogenesis [BR:
rug03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
QC826_07355 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
RrnaAD
Methyltransf_31
TRM5-TYW2_MTfase
TRAM
Methyltransf_25
PDGF
Methyltransf_15
MTS
Methyltrans_SAM
Methyltransf_32
PCMT
Motif
Other DBs
NCBI-ProteinID:
WGG51999
LinkDB
All DBs
Position
1608250..1609590
Genome browser
AA seq
446 aa
AA seq
DB search
MQENIIEIKSLDMDARGVGHLRNEDGSQGKVVFVEGALPGERVSFVSFKRKKNWEMANMT
ELLRESSLRVKPPCVHYDNCGGCSMQHLEPTAQVAIKQRVLEDNLQHIGKVRPQHVMRPM
YGPTWGYRFRARLSVRFVPRRNEAVVGFREKKSTYIADMDSCMILPPHVSAMLLPLRALV
TSLSLREQIPQIEVAVGEDVTAMVLRNMAALTADDENKLKAFADQHQVQWWLQSKGPESA
VPFYPLDKQLHYLLPEFGVRMPFKPVDFTQVNHLINRVLVGKALRLLEVQPTDRVADLFC
GLGNFTLPLATQAREVVGIEGLTTLTERALDNASVNGLSAKTSFSTRNLFEITAEDFAVL
GKFDRMLIDPPRDGAMAVCEALAELKLSHPDMLPKRIVYVSCSPSTLARDAGILCNTAGY
VLSKAGVVNMFPHTSHVESMAVFDLA
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgcaagaaaatatcatcgagatcaaatcgctggacatggacgcccgtggcgttggccat
ctgcgcaacgaggacggcagccagggcaaggtggtctttgtcgagggcgcgttgccgggc
gagcgggtcagcttcgtcagcttcaagcgcaagaagaactgggaaatggccaacatgacc
gagctgctgcgcgaatcgtcgctgcgggtcaagccgccctgcgtgcactacgacaactgc
ggcggctgctcgatgcagcacctggagccgaccgcccaggtcgccatcaagcagcgcgtg
ctggaggacaacctgcagcacatcggcaaggtccgcccgcagcacgtgatgcggccgatg
tacggcccgacctggggctaccgcttccgcgcccgcctgtcggtgcgcttcgtgccgcgt
cgcaacgaggcggtggtcggcttccgcgagaagaagtcgacctacatcgccgacatggac
agctgcatgatcctgccgccgcacgtctcggccatgctgctgccgctgcgcgcgctggtc
acctcgctgtcgctgcgcgagcagatcccgcagatcgaggtggcggtgggcgaggacgtc
accgccatggtgctgcgcaacatggcggcgctcacggccgacgacgagaacaagctcaag
gccttcgccgaccagcaccaggtgcaatggtggttgcagagcaaggggccggagagcgcc
gtgccgttctatccgctggacaagcagttgcactacctgctgcccgagttcggcgtgcgc
atgccgttcaagccggtcgacttcacccaggtcaaccacctgatcaaccgcgtgctggtg
ggcaaggccctgcgcctgctcgaggtgcagccgaccgaccgcgtcgccgacctgttctgc
ggcctgggcaacttcaccctgccgctggcgacccaggcgcgcgaggtggtcggcatcgag
ggcctgaccacgctgaccgagcgcgcgctcgacaacgccagcgtcaacggcctgtcggcc
aagaccagcttctcgacgcgcaacctgttcgagatcaccgccgaggactttgccgtattg
ggcaagttcgaccgcatgctgatcgacccgccgcgcgacggcgccatggcggtctgcgag
gcgctcgccgagctcaagctgagccacccggacatgctgcccaagcgcatcgtctacgtg
tcgtgcagcccgtcgaccctggcgcgtgacgccggcatcctgtgcaacacggccggctac
gtgctgagcaaggccggcgtggtcaacatgttcccgcacacctcgcacgtcgagtcgatg
gcggtgttcgacctggcctga
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