Rugamonas sp. DEMB1: QC826_07945
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Entry
QC826_07945 CDS
T08988
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
rug
Rugamonas sp. DEMB1
Pathway
rug03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rug00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QC826_07945 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rug03019
]
QC826_07945 (pnp)
03016 Transfer RNA biogenesis [BR:
rug03016
]
QC826_07945 (pnp)
Enzymes [BR:
rug01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
QC826_07945 (pnp)
Messenger RNA biogenesis [BR:
rug03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
QC826_07945 (pnp)
Transfer RNA biogenesis [BR:
rug03016
]
Prokaryotic type
tRNA degradation factors
QC826_07945 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH_2
OB_RRP5_4th
S1_RRP5
KH_KhpA-B
DUF5813
KH-I_KHDC4-BBP
PCB_OB
Motif
Other DBs
NCBI-ProteinID:
WGG52099
LinkDB
All DBs
Position
1739173..1741287
Genome browser
AA seq
704 aa
AA seq
DB search
MFNKVTKTFQYGQHQVTLETGEIARQASGAVLVSIEDTVVLATVVARKDAKPGQDFFPLT
VDYVEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGYLNEVQIIIHVLSV
NPEIDPDIAAMIGASAALCISGVPFNGPIGAARVGYANGQYILNPTVAQLKTSEMDLVVA
GTETAVLMVESEAKQLSEEIMLGAVVFGHDQMKAVIDAIHELVRDGGKPEVEWAPPAKNE
VLIGRVEHFGGAKIRDAYLTKDKQERTAKLKAATSETLAELGAEAAAAGAAPVDAAEVNN
ILFDMEAKIVRSQILDGEPRIDGRDTRTVRPISIRTSVLPRTHGSALFTRGETQALVVAT
LGTARDSQKIDALMGEFTDSFMLHYNMPPFATGETGRVGTPKRREIGHGRLAKRALIAAL
PSPEEFSYSVRLVSEITESNGSSSMASVCGGCLALMDAGVPMKEHVAGIAMGLIKEGGKF
AVLSDILGDEDHLGDMDFKVAGTRNGITALQMDIKIMGITKEIMQVALAQAKEGREHILG
EMQKAMPHVKTELSDFAPRLITIKINPEKIRDVIGKGGAVIRALTEETGTQIDISDEGVV
TIASVDAAAGQEAKRRIEELTASVEVGKVYEGTVLKLLDFGAIVQVMPGKDGLLHISQIA
NERVNAVADYLKEGQQVRVKVLETDDRGRLKLSMKAAAEEAAAQ
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgtttaacaaagttacgaaaaccttccagtacggtcaacaccaggtcaccctggaaacc
ggcgagatcgctcgccaggcttccggcgccgtcctcgtgtcgattgaagacaccgtggtc
ctggcgaccgttgtggcacgcaaagatgccaagccaggccaggatttcttccccctgacc
gtcgactacgttgaaaaaacctatgctgccggtaaaatcccgggcggtttcttcaagcgc
gaaggccgtccttcggaaaaagaaacgctgacctcccgcctgatcgaccgtcctatccgt
ccgctgttcccggaaggctacctgaatgaagtgcagatcatcattcacgtgctgtcggtc
aaccccgagatcgatccggacatcgccgccatgatcggcgcctccgccgccctgtgcatc
tccggcgtgccgttcaacggcccgatcggcgccgcccgcgtcggctacgccaacggccag
tacatcctgaacccgaccgtcgcccagctgaaaacctcggaaatggacctggttgtcgcc
ggtaccgaaacggccgtgctgatggtcgaatcggaagccaagcagctgtccgaagaaatc
atgctcggcgccgtggtgttcggccacgaccagatgaaagcggtcatcgacgcgatccac
gaactggtgcgcgacggcggcaagccggaagtcgaatgggccccaccggccaagaacgaa
gtcctgatcggccgcgtcgagcatttcggcggcgccaagatccgtgacgcctacctgacc
aaagacaagcaagagcgcaccgccaagctgaaggccgccacctccgaaacgctggccgag
ctgggcgccgaagcggccgccgccggcgccgcaccggtcgacgcagccgaagtcaacaac
atcctgttcgacatggaagcgaagatcgtccgttcgcagatcctcgacggcgagccacgc
atcgacggccgcgacacccgcaccgtgcgtccgatttcgatccgcacctcggtgctgccg
cgcacccacggttcggccctgttcacccgtggcgaaacccaggcgctggtcgtggccacg
ctgggcaccgcccgcgacagccagaagatcgacgcgctgatgggcgagttcaccgactcg
ttcatgctgcactacaacatgccaccgttcgccaccggcgaaaccggccgcgtcggcacg
cctaagcgccgcgaaatcggccacggccgtctggccaagcgcgcgctgatcgccgccctg
ccatcgccggaagagttcagctactccgtgcgcctggtgtcggaaatcaccgagtcgaac
ggctcctcgtcgatggcttcggtctgcggcggctgcctggcactgatggacgccggcgtg
ccgatgaaagagcacgtggccggtatcgccatgggcctgatcaaggaaggcggcaagttc
gccgtgctgtcggacatcctgggcgacgaagaccacctgggcgacatggacttcaaggtc
gccggtacgcgcaacggtatcaccgcgctgcagatggacatcaagatcatgggcatcacc
aaggaaatcatgcaagtggcgctggcgcaagccaaggaaggccgcgagcacatcctgggc
gaaatgcaaaaagccatgccgcacgtgaagaccgagctgtcggacttcgccccgcgcctg
atcaccatcaagatcaatccggaaaaaatccgtgacgtgatcggcaagggcggcgccgtc
atccgcgcgctgaccgaagagaccggcacccagatcgacatcagcgacgaaggcgtggtc
accatcgcctccgtcgacgccgccgccggccaggaagccaagcgtcgcatcgaagagctg
accgcctcggttgaggtgggcaaggtctacgaaggcaccgtgctgaaactgctcgacttc
ggcgccatcgtccaagtcatgccgggcaaggacggcctgctgcacatctcgcagatcgcc
aacgagcgtgtcaacgccgtcgccgactacctgaaagaaggccagcaagtgcgcgtcaag
gttctggaaaccgacgaccgcggccgtctgaagctgtcgatgaaggccgccgctgaagaa
gccgctgcccagtaa
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