KEGG   Rugamonas sp. DEMB1: QC826_07945
Entry
QC826_07945       CDS       T08988                                 
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
  KO
K00962  polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Organism
rug  Rugamonas sp. DEMB1
Pathway
rug03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rug00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    QC826_07945 (pnp)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rug03019]
    QC826_07945 (pnp)
   03016 Transfer RNA biogenesis [BR:rug03016]
    QC826_07945 (pnp)
Enzymes [BR:rug01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     QC826_07945 (pnp)
Messenger RNA biogenesis [BR:rug03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     QC826_07945 (pnp)
Transfer RNA biogenesis [BR:rug03016]
 Prokaryotic type
  tRNA degradation factors
   QC826_07945 (pnp)
SSDB
Motif
Pfam: RNase_PH RNase_PH_C S1 PNPase KH_1 KH_2 OB_RRP5_4th S1_RRP5 KH_KhpA-B DUF5813 KH-I_KHDC4-BBP PCB_OB
Other DBs
NCBI-ProteinID: WGG52099
LinkDB
Position
1739173..1741287
AA seq 704 aa
MFNKVTKTFQYGQHQVTLETGEIARQASGAVLVSIEDTVVLATVVARKDAKPGQDFFPLT
VDYVEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGYLNEVQIIIHVLSV
NPEIDPDIAAMIGASAALCISGVPFNGPIGAARVGYANGQYILNPTVAQLKTSEMDLVVA
GTETAVLMVESEAKQLSEEIMLGAVVFGHDQMKAVIDAIHELVRDGGKPEVEWAPPAKNE
VLIGRVEHFGGAKIRDAYLTKDKQERTAKLKAATSETLAELGAEAAAAGAAPVDAAEVNN
ILFDMEAKIVRSQILDGEPRIDGRDTRTVRPISIRTSVLPRTHGSALFTRGETQALVVAT
LGTARDSQKIDALMGEFTDSFMLHYNMPPFATGETGRVGTPKRREIGHGRLAKRALIAAL
PSPEEFSYSVRLVSEITESNGSSSMASVCGGCLALMDAGVPMKEHVAGIAMGLIKEGGKF
AVLSDILGDEDHLGDMDFKVAGTRNGITALQMDIKIMGITKEIMQVALAQAKEGREHILG
EMQKAMPHVKTELSDFAPRLITIKINPEKIRDVIGKGGAVIRALTEETGTQIDISDEGVV
TIASVDAAAGQEAKRRIEELTASVEVGKVYEGTVLKLLDFGAIVQVMPGKDGLLHISQIA
NERVNAVADYLKEGQQVRVKVLETDDRGRLKLSMKAAAEEAAAQ
NT seq 2115 nt   +upstreamnt  +downstreamnt
atgtttaacaaagttacgaaaaccttccagtacggtcaacaccaggtcaccctggaaacc
ggcgagatcgctcgccaggcttccggcgccgtcctcgtgtcgattgaagacaccgtggtc
ctggcgaccgttgtggcacgcaaagatgccaagccaggccaggatttcttccccctgacc
gtcgactacgttgaaaaaacctatgctgccggtaaaatcccgggcggtttcttcaagcgc
gaaggccgtccttcggaaaaagaaacgctgacctcccgcctgatcgaccgtcctatccgt
ccgctgttcccggaaggctacctgaatgaagtgcagatcatcattcacgtgctgtcggtc
aaccccgagatcgatccggacatcgccgccatgatcggcgcctccgccgccctgtgcatc
tccggcgtgccgttcaacggcccgatcggcgccgcccgcgtcggctacgccaacggccag
tacatcctgaacccgaccgtcgcccagctgaaaacctcggaaatggacctggttgtcgcc
ggtaccgaaacggccgtgctgatggtcgaatcggaagccaagcagctgtccgaagaaatc
atgctcggcgccgtggtgttcggccacgaccagatgaaagcggtcatcgacgcgatccac
gaactggtgcgcgacggcggcaagccggaagtcgaatgggccccaccggccaagaacgaa
gtcctgatcggccgcgtcgagcatttcggcggcgccaagatccgtgacgcctacctgacc
aaagacaagcaagagcgcaccgccaagctgaaggccgccacctccgaaacgctggccgag
ctgggcgccgaagcggccgccgccggcgccgcaccggtcgacgcagccgaagtcaacaac
atcctgttcgacatggaagcgaagatcgtccgttcgcagatcctcgacggcgagccacgc
atcgacggccgcgacacccgcaccgtgcgtccgatttcgatccgcacctcggtgctgccg
cgcacccacggttcggccctgttcacccgtggcgaaacccaggcgctggtcgtggccacg
ctgggcaccgcccgcgacagccagaagatcgacgcgctgatgggcgagttcaccgactcg
ttcatgctgcactacaacatgccaccgttcgccaccggcgaaaccggccgcgtcggcacg
cctaagcgccgcgaaatcggccacggccgtctggccaagcgcgcgctgatcgccgccctg
ccatcgccggaagagttcagctactccgtgcgcctggtgtcggaaatcaccgagtcgaac
ggctcctcgtcgatggcttcggtctgcggcggctgcctggcactgatggacgccggcgtg
ccgatgaaagagcacgtggccggtatcgccatgggcctgatcaaggaaggcggcaagttc
gccgtgctgtcggacatcctgggcgacgaagaccacctgggcgacatggacttcaaggtc
gccggtacgcgcaacggtatcaccgcgctgcagatggacatcaagatcatgggcatcacc
aaggaaatcatgcaagtggcgctggcgcaagccaaggaaggccgcgagcacatcctgggc
gaaatgcaaaaagccatgccgcacgtgaagaccgagctgtcggacttcgccccgcgcctg
atcaccatcaagatcaatccggaaaaaatccgtgacgtgatcggcaagggcggcgccgtc
atccgcgcgctgaccgaagagaccggcacccagatcgacatcagcgacgaaggcgtggtc
accatcgcctccgtcgacgccgccgccggccaggaagccaagcgtcgcatcgaagagctg
accgcctcggttgaggtgggcaaggtctacgaaggcaccgtgctgaaactgctcgacttc
ggcgccatcgtccaagtcatgccgggcaaggacggcctgctgcacatctcgcagatcgcc
aacgagcgtgtcaacgccgtcgccgactacctgaaagaaggccagcaagtgcgcgtcaag
gttctggaaaccgacgaccgcggccgtctgaagctgtcgatgaaggccgccgctgaagaa
gccgctgcccagtaa

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