Rugamonas sp. DEMB1: QC826_12420
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Entry
QC826_12420 CDS
T08988
Name
(GenBank) ATP-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rug
Rugamonas sp. DEMB1
Pathway
rug03420
Nucleotide excision repair
rug03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rug00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
QC826_12420
03430 Mismatch repair
QC826_12420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rug03400
]
QC826_12420
Enzymes [BR:
rug01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
QC826_12420
DNA repair and recombination proteins [BR:
rug03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QC826_12420
MMR (mismatch excision repair)
Other MMR factors
QC826_12420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
DUF5710
AAA_19
UvrD_C_2
Viral_helicase1
AAA_30
Motif
Other DBs
NCBI-ProteinID:
WGG52868
LinkDB
All DBs
Position
complement(2739388..2741544)
Genome browser
AA seq
718 aa
AA seq
DB search
MNEPNLPRFIPQGLRPTPEQTAIQLAQNKVVLIDANAGAAKTTTLAIRIGEAIARKLAPE
QILALTFTPEARDVMRQRLLDVGVPYATVARIAVLTFEDFAARELARIDSDDAKACPQPR
QLKPYALAAIEQAGARFGGLYEDLDLRTHNIALSQFLDVQLSLKATMGLEQVDVDYLGPE
ECAEQLNMTLTDFLVATEYERIRLGSREGALFRGPFDATYDLARSLSAMPDLAQDMAAYR
VVVCDELHDLNEAAFRILNALIAKPSCFFVGAGDKDQVIHAKLGASEDFLRHRFGHSYPN
LVRYPLTYTYRHGPHLAYAMAEFKHKPVDSNLPLRTEIRDGHYDNAAGHDACAEQAVAAL
AQWKRDGNPLDGCAILIRDRHQSVAIENALMRAKIGYRTQEMAGYLQRDEILFLRGMMAL
ALDDLQAVKSYEVRTGIVEALAIFAEVELTPQKMEQAKFAIAKDPQLLRDFFSAYISSDE
REQSRAAARQITEVIASLKEAGAEANAEQALRAVCAQMHLETAARRIFVRPYDASVVAKS
LAGFLAAAAGTGMSLRDFWAWINASEAFASRKRDKDVVAIECVANAKGKEYAHVLLPFLE
VGEFPSPLCALRDEENLFYVAATRAKARLTLLSPSEPAQRSPFIAQMRLAKTMAAADAAL
GRNEDRPRPAAPARLYLSATFHERMEVKALGAEYDLARKAWFVPAGLDPKPFARWIRG
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgaatgagcccaacctcccccgcttcatcccgcaaggcctgcgccccaccccggaacag
accgccatccagctggcgcagaacaaggtggtgctgatcgacgccaacgccggcgccgcc
aagaccaccacgctggccatccgcatcggcgaggccatcgcccgcaagctggcgcccgag
cagatcctggcgctcaccttcacccccgaggcgcgcgacgtgatgcgccagcgcctgctc
gacgtcggcgtgccctacgccaccgtggcgcgcatcgccgtgctgaccttcgaggacttc
gccgcccgcgagctggcccgcatcgacagcgacgacgccaaggcctgcccgcagccgcgc
cagctcaagccctacgccctggccgccatcgagcaggccggcgcgcgcttcggcggcctg
tatgaagacctggacctgcgcacccacaacatcgcgctgagccagttcctcgacgtgcag
ctgagcctgaaggcgacgatggggctcgagcaggtcgacgtcgactacctcggccccgag
gagtgcgccgagcagctcaacatgaccctgaccgacttcctggtcgccaccgaatacgag
cgcatccgcctgggcagccgcgagggcgcgctgttccgcggccccttcgacgccacctac
gacctggcgcgcagcctgtcggccatgcccgacctggcgcaggacatggcggcctaccgc
gtcgtcgtctgcgacgagctgcacgacttgaacgaggccgccttccgcatcctcaacgcg
ctgatcgccaagccgagctgcttcttcgtcggcgccggcgacaaggaccaggtgatccac
gccaagctcggggccagcgaggacttcctgcgccaccgcttcggccacagctacccgaat
ttggtgcgctacccgctcacctacacctaccgccacggcccgcacctggcctacgccatg
gccgagttcaagcacaagccggtcgactccaacctgccgctgcgcaccgagatccgcgac
ggccactacgacaacgccgccggccacgacgcctgcgccgagcaggccgtggccgcgctg
gcgcagtggaagcgcgacggcaacccgctcgacggctgcgccatcctgatccgcgaccgc
caccagtcggtggccatcgagaacgcgctgatgcgcgccaagatcggctaccgcacgcag
gagatggccggctacctgcagcgcgacgagatcctgttcctgcgcgggatgatggcgctg
gccttggacgacctgcaggccgtcaaatcctacgaggtgcgcaccggcatcgtcgaggcg
ctggcgatcttcgccgaggtcgagctgacgccgcagaagatggagcaggccaagttcgcc
atcgccaaggacccgcagctgctgcgcgacttcttcagcgcctacatcagcagcgacgaa
cgcgagcagtcgcgcgcggcggcgcggcagatcaccgaggtcatcgccagcctgaaggag
gccggcgccgaggccaacgccgagcaggcgctgcgcgccgtctgcgcgcagatgcacctg
gagacggcggcgcggcgcatcttcgtgcggccctacgacgccagcgtggtggccaagtcg
ctcgccggcttcctcgcggcggcggccggcaccggcatgtcgctgcgcgacttctgggcc
tggatcaacgccagcgaggctttcgccagccgcaagcgcgacaaggacgtggtcgccatc
gaatgcgtcgccaacgccaagggcaaggaatacgcccacgtgctgctgcccttcctcgag
gtgggcgagttccccagcccgctgtgcgcgctgcgcgacgaggagaacctgttctacgtc
gccgccacccgcgccaaggcgcgcctgaccctgctgtcgccgagcgagccggcgcagcgc
agccccttcatcgcgcagatgcggctggccaagaccatggccgccgccgacgccgcgctg
ggccgcaacgaggaccgcccgcgccccgccgcaccggcgcgcctgtacctgagcgccacc
ttccacgagcgcatggaggtcaaggccctgggcgccgagtacgacctggcgcgcaaggcc
tggttcgtgcccgccggcctggacccgaagccgttcgcccgctggatacgcggctag
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