Rugamonas sp. DEMB1: QC826_14980
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Entry
QC826_14980 CDS
T08988
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rug
Rugamonas sp. DEMB1
Pathway
rug03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rug00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QC826_14980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rug03019
]
QC826_14980
Enzymes [BR:
rug01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
QC826_14980
Messenger RNA biogenesis [BR:
rug03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
QC826_14980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
WGG53289
LinkDB
All DBs
Position
3311165..3312736
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AA seq
523 aa
AA seq
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MSFHTLGLIDPIQRTLDALGYTEPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFALPIL
QRLTMDGVVAPQSVRCLVLVPTRELAEQVYDSFRRYGASLPLRSYVAYGGVAIEPQISKL
RKGLDVLVATPGRLLDLYGQGVLNFDSLQTLVLDEADRMLDLGFSRELNAVFDALPKQRQ
TLLFSATFSDAIRALAGGLLNNPVQIQVSPRNTATKTVKQWLIPTDKKRKPELFLHLLKQ
RCWGQVLVFVKTRKGVDALVKILLEQGVAADAIHGDKTQPARLRALDRFKTAQVQVLVAT
DVAARGLDIDALPQVVNFDLPTVAEDYIHRIGRTGRAGAEGEAVSLVCADEVDLLAEIEK
LTRQVIRREEEPGFEADHRVPATGPAGAAAAVAAAAAKEATSKKKRAFTGPPGGKAAPSG
GKAMPSAGKAVPSGGKAALSGGHPGQSSATPVAGLGAPAAKSGKFGGGAGAGGGAARRGG
QAAGAPLPKGAVFVTAGRGAKSTARAAAQPAARKAAKPGGRGR
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atgagcttccacaccctcggcctgatcgaccccatccagcgcaccctagacgcgctgggc
tacacggaaccgacgccggtgcaggcgcaggcgatccccgccgtgctggccggccgcgac
ctgatggccgccgcccagaccggcaccggcaagaccgccggcttcgccctgcccatcctg
cagcggctgaccatggacggcgtggtcgcgccgcagtcggtgcgctgcctggtgctggtg
cccacccgcgagctggccgagcaggtctacgacagcttccgccgctacggcgccagcctg
ccgctgcgctcctacgtggcctacggcggcgtggcgatcgaaccgcagatcagcaagctg
cgcaagggcctcgacgtgctggtggccacccccggccgcctgctcgacctgtacggccag
ggcgtgctcaacttcgactcgctgcagacgctggtgctcgacgaggccgaccgcatgctc
gaccttggcttctcgcgcgaactgaacgccgtgttcgacgccctgcccaagcagcgccag
accctgttgttctcggccaccttctccgacgccatccgcgcgctggccggcggcctgctc
aacaacccggtgcagatccaggtcagcccgcgcaacaccgccaccaagaccgtcaagcag
tggctgatcccgaccgacaagaagcgcaagccggagctgttcctgcacctgctcaagcag
cggtgctggggccaggtgctggtgttcgtcaagacccgcaagggcgtcgacgcgctggtc
aagatcctgctggagcaaggcgtggcggccgacgccatccacggcgacaagacccagccg
gcgcgcctgcgcgcgctggaccgcttcaagacggcgcaggtgcaggtgctcgtcgccacc
gacgtggccgcgcgcgggctcgacatcgacgccctgccgcaggtggtcaacttcgacctg
cccaccgtggccgaggactacatccaccgcatcggccgcaccggccgcgccggcgccgag
ggcgaggccgtctcgctggtctgcgccgacgaggtcgacctgctggccgagatcgaaaag
ctgacccgccaggtgatccgccgcgaggaggagcccggcttcgaggccgaccaccgcgtg
ccggccaccggcccggccggcgccgccgccgcggtggccgccgccgcagccaaggaggcg
accagcaagaagaagcgcgccttcaccgggccgcccggtggcaaggccgcgccgtcgggc
ggcaaagcgatgccgtccgctggcaaagcggtgccgtccggtggtaaagcggcgctttcc
ggcggccatcccggccagtccagcgccacgccggtggccggcctgggcgccccggcggcc
aagtccggcaagttcggcggcggtgcgggggccggtggtggagcggcgcggcgaggtggc
caagccgccggcgcaccgttgccgaagggcgccgtgttcgtcaccgccggccggggcgcc
aagtcgaccgcccgcgcggcggcccagccggccgcgcgcaaggccgccaagcccggtggg
cgcggccgttaa
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