Rugamonas sp. DEMB1: QC826_16965
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Entry
QC826_16965 CDS
T08988
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
rug
Rugamonas sp. DEMB1
Pathway
rug03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rug00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
QC826_16965 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rug03400
]
QC826_16965 (recD)
Enzymes [BR:
rug01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
QC826_16965 (recD)
DNA repair and recombination proteins [BR:
rug03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
QC826_16965 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
UvrD_C_2
SH3_13
Viral_helicase1
AAA_11
Helicase_RecD
AAA_22
UvrD-helicase
PhoH
AAA_16
DEAD
SLFN-g3_helicase
nSTAND3
AAA_24
AAA_28
TraI_hel_assoc_N
Mg_chelatase
Motif
Other DBs
NCBI-ProteinID:
WGG48398
LinkDB
All DBs
Position
complement(3734343..3736373)
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AA seq
676 aa
AA seq
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MTIDPHTFRPTPADAATLALLAQVDALTEDGQLRRLSAAFARFIGSIGGGSPQLALACVL
LSELEGRGHSCLELDALARDPAGLLGWGEDSWRGLREAAGVWPKRGAAWHALLAACEQVW
AVGDLDFEQPLVLDGERLYLRRYWRDETLVAQAVRGRALTPRQPDLAEVRRWLDLLFEHA
PREGGPDWQKIACAVALHGNMAIITGGPGTGKTYTVARLLALLFASAGEGSGRLRIALAA
PTGKAAARLKQSIDHALDGLADRVGPALPLRELAARMGAARTLHSLLGARPGTRAFQHHA
GNPLDVDVLIVDEASMVHLEMMAALLDALPPQAMLVLLGDKDQLASVEAGAVLGDLCHEA
QAGAYSMETLRYVQESSGQTIPDAFVGAGGPLAQQTVMLRQSRRFSGPIGALALAVNAGD
AAAAQEVLRGNSDGKLAWIAPAQQADVLQLALAGRADEIGGGYRPYLRMIQSGPGQADES
GHDGGQDGGHDGWVRGVLHSFEAFRILCAVREGEWGVAGLNEAIEHKLEGAGLIRKRGEW
YVGRPVMVTRNDYATGVFNGDIGLTLPDPARPGYLRVYFSEGDKVRSVLATRLRNVETAF
AMTVHKSQGSEFSHTVMVLPREGGAVIARELVYTGITRARELFTLLTPAPQVLLDAIAAR
TQRASGLRELLDSPTV
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atgacgattgatccgcacaccttccggccgacgccggccgacgccgccacactggcgctg
ctggcccaggtcgacgccctcaccgaagacggccagttgcgccgcctgagcgccgccttc
gcccgcttcatcggctcgataggcggcggttcgccgcaattggcgctcgcttgcgtgctg
ttgtccgaacttgaggggcgcggccacagctgcctggaactcgacgcgctggcgcgcgac
ccggccggcctgctcggttggggcgaggacagctggcgcggcctgcgcgaggcggccggc
gtctggcccaagcgcggcgccgcctggcacgccttgctggcggcctgcgagcaggtgtgg
gcggtcggcgacctcgatttcgagcagccgctggtgctcgacggcgaacggctctacctg
cgccgctactggcgcgacgagacgctggtggcgcaggccgtgcgcggccgcgcgctgacg
ccgcgccagcccgacctggccgaggtgcggcgctggctggacctgctgttcgagcacgcg
ccgcgcgagggcgggccggactggcaaaagatcgcctgcgccgtcgccctgcacggcaac
atggcgatcatcaccggcgggccgggcaccggcaagacctacacggtggcgcgtctgctg
gcgctgctgttcgccagcgccggcgagggcagcggacggctgcgcatcgccttggcggcg
cccaccggcaaggcggcggcgcggctcaagcagtcgatcgaccacgccctcgacggcctg
gccgaccgggtcggcccggcgctgccgctgcgcgagctggcggcgcgcatgggcgcggcg
cgcaccctgcacagcctgctgggggcgcggccgggcacgcgcgccttccaacaccacgcc
ggcaacccgctcgacgtcgacgtgctgatcgtcgacgaggcctcgatggtgcacttggag
atgatggcggcgctgctcgacgcgctgccgccgcaggcgatgttggtgctgctcggcgac
aaggaccagctggcctcggtcgaggccggcgccgtgttgggcgacctgtgccacgaggcc
caggccggcgcctattcgatggaaaccttgcgctatgtgcaagagagcagcggccagacc
attcccgacgccttcgtcggcgccggcggcccgctggcccagcagaccgtgatgttgcgc
cagagccggcgcttcagcggtccgatcggcgcgctggcgctggccgtcaacgccggcgac
gcggccgccgcgcaggaggttctgcgcggcaacagcgacggcaaactggcctggatcgcg
ccggcgcaacaggccgacgtgctgcaactggccctggccggccgcgccgacgagataggc
ggaggctatcggccctacctgaggatgatccaatccggccccggccaagccgacgagtcc
ggccatgacggcggccaagacggcggccacgacggctgggtgcgcggcgtgctgcacagc
ttcgaagccttccgcatcctgtgcgcggtgcgcgagggcgagtggggcgtggccggtttg
aacgaggcgatcgagcacaagctggagggggccgggctgatccgcaagcggggcgaatgg
tatgtcggccggccggtgatggtcacccgcaacgactacgccaccggcgtgttcaacggc
gacatcggcctgaccctgcccgatccggcgcggcccggttatctgcgcgtctacttctcc
gagggcgacaaggtgcgcagcgtgctggccacgcgcctgcgcaatgtcgagaccgccttc
gccatgacggtgcataaatcgcaaggttccgagttcagccacaccgtcatggtgttgccg
cgcgaaggcggggcggtgatcgcgcgggagctggtgtacaccggcatcacccgcgcgcgc
gagctgttcacactgctcacgccggcaccacaagtgctgctcgacgccatcgccgcgcgt
acccagcgcgcctccggtctgcgcgaactgctcgattcgccgaccgtttag
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