Rugamonas sp. DEMB1: QC826_24220
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Entry
QC826_24220 CDS
T08988
Name
(GenBank) collagenase
KO
K01387
microbial collagenase [EC:
3.4.24.3
]
Organism
rug
Rugamonas sp. DEMB1
Brite
KEGG Orthology (KO) [BR:
rug00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
rug01002
]
QC826_24220
09183 Protein families: signaling and cellular processes
02042 Bacterial toxins [BR:
rug02042
]
QC826_24220
Enzymes [BR:
rug01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.24 Metalloendopeptidases
3.4.24.3 microbial collagenase
QC826_24220
Peptidases and inhibitors [BR:
rug01002
]
Metallo peptidases
Family M9
QC826_24220
Bacterial toxins [BR:
rug02042
]
Toxins that damage the extracellular matrix
Hyaluronidases/Collagenases
QC826_24220
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_M9
Peptidase_M9_N
PPC
Motif
Other DBs
NCBI-ProteinID:
WGG49603
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Position
complement(5263663..5265951)
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AA seq
762 aa
AA seq
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MSLPSTPARLPKLLLASLIGAALAATAAAPAHAGGGRSAAPAADENGRLKQAPMPQLRQN
LPPSEEQSRYRLSPSNKPRYDLLPRQQRNSVQPLSATPACKDMAVLAGHSGAALADYLVG
LPDFECTYPLFSLSAEQAAVVYSAANYNAVASRLAQEGAAYNASGMALVNLVLYLRAGYY
LAYSELGPMPPSALTTTLRGPIRQLAEGAALFRENPLALTTANETLKLITNMQDEAYYLP
TLRGVVQRYTNRPDAPNAVEPLKQPTAAYGFTELLTVFFYASGRPAAQPALENDLSYATA
LNQFVRANKAALLNSNAAYQLTDASNEAFRFMRYPALKAGIKPMVVDLLASTSLNGADRD
LWLTGAMAVKYNDNDNCAQYGTCGFETALANAVLKFSKTCSPTLRIRAQEMSEAQLQDSC
QRLQTEEGYAHSMLLTKNTPVAGDGNASLELVVFDDYSNYSKYASVIYDILTDNGGMYLE
GEPSAAGNQARFIAHEASWLRPNFQVWNLEHEYVHYLDGRFDLYGDFGQSTAKPTVWWIE
GIAEYLSLKNNNQAAIDMARSGSYRLSEIFGNNYQMSDYSNRAYRWGYMATRFMVERHRA
DVDAVLGKFRLGDYDGYQSYMGQIGSRYDNEFASWAATASTAGEPPLPLPDDREWPTCPA
SPYLGKNCAVKNLASSTQAYAYIMLPAGARNVKLATVGGSGDVDMYVALDRYPSATSYDL
SSVHAGNAESVAIAAPAIGRWYYITLQAKQPFSGVSVRASYD
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atgtcattgccaagcacccccgcacgcctgcccaaactgctgctggccagcctgatcggc
gccgccctcgccgccaccgccgccgccccggcccacgccggtggcgggcgctccgccgcg
ccggccgccgatgaaaacggccgcctgaagcaggcgccgatgccgcaactgcggcagaac
ctgccgccgtccgaggagcagagccgctaccgcctgtcgcccagcaacaaaccgcgctac
gacctgctgccgcgccagcagcgcaacagcgtccagccgctgtcggccacgccggcctgc
aaggacatggccgtgctggccggccacagcggcgccgccctggccgactacctggtcggc
ctgcccgacttcgaatgcacctatccgctgttctcgttgagcgccgaacaggccgccgtg
gtctattcggccgccaactacaacgccgtcgccagccggctggcgcaggagggcgccgcc
tacaacgccagcggcatggcgctggtcaacctggtgctgtacctgcgcgccggctactac
ctggcctacagcgagctcggcccgatgccgccgtcggccctcaccaccacgctgcgcggc
ccgatcaggcaactggccgagggcgcggcgctgttccgcgagaacccgctcgccctcacc
accgccaacgagacgctcaagctgatcaccaatatgcaggacgaggcctactacctgccc
accctgcgcggcgtggtgcagcgctacaccaaccgacccgacgcgcccaacgccgtcgag
ccgctcaagcagcccaccgccgcctacggcttcaccgagctgttgacggtgttcttctac
gccagcggccggcccgccgcccagccggcgctggaaaacgacctgtcctacgccaccgcg
ctgaaccagttcgtccgcgccaacaaggccgccctgttgaacagcaacgccgcctaccag
ctgaccgacgccagcaacgaggccttccgcttcatgcgctacccggcgctcaaggccggc
atcaagccgatggtggtcgacctgctggccagcacctcgctcaacggcgccgaccgcgac
ctgtggctgaccggcgccatggccgtcaaatacaacgacaacgacaactgcgcccagtac
ggcacctgcggcttcgagacggcgctggccaacgccgtgctcaagttcagcaagacctgc
agcccgaccctgcgcatccgcgcccaggagatgagcgaggcgcagctgcaggactcttgc
cagcgcctgcagacggaggagggctacgcccacagcatgctgctgaccaagaacacgccc
gtggccggcgacggcaacgcctcgctcgagctggtggtgttcgacgactacagcaactac
agcaaatacgcctcggtgatctacgacatcctcaccgacaacggcggcatgtacctggag
ggcgagccgtccgccgccggcaaccaggcccgcttcatcgcccacgaggcgtcctggctg
cggccgaacttccaggtgtggaacctggagcacgagtacgtccactacctcgacggccgt
ttcgacttgtacggcgacttcggccagtccaccgccaagcccaccgtctggtggatcgag
ggcatcgccgaatacctgtcgctgaagaataacaaccaggcggcgatcgacatggcgcgc
agcggcagctaccgcctgagcgaaatcttcggcaacaactaccagatgagcgactacagc
aaccgcgcctaccgctggggctacatggcgacccgcttcatggtcgagcgccaccgcgcc
gacgtcgacgccgtgctcggcaagttccgcctgggcgactacgacggctaccagagctac
atgggccagatcggcagccgctacgacaacgagttcgccagctgggcggcgacggccagc
accgccggcgaaccgccgctgccgctgccggacgaccgcgagtggccgacctgcccggcc
tcgccctacctgggcaagaattgcgcggtcaaaaaccttgcctcctcgacccaagcctac
gcctacatcatgctgccggccggcgcaagaaacgttaaattggccaccgtcggcggcagc
ggcgatgtcgacatgtatgtcgcgctggaccgctatcccagcgcgacgtcctacgacctg
tcctcggtccacgccggcaacgcggaaagcgtggcgatcgccgcgccggccatcggccgc
tggtactacatcacgctgcaagccaagcagccgttcagcggtgtgagcgtgcgcgccagc
tacgactga
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