Rugamonas sp. DEMB1: QC826_28495
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Entry
QC826_28495 CDS
T08988
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
rug
Rugamonas sp. DEMB1
Brite
KEGG Orthology (KO) [BR:
rug00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rug03016
]
QC826_28495
Enzymes [BR:
rug01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
QC826_28495
Transfer RNA biogenesis [BR:
rug03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
QC826_28495
Prokaryotic type
tRNA splicing ligases
QC826_28495
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
WGG50314
LinkDB
All DBs
Position
complement(6185419..6186654)
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AA seq
411 aa
AA seq
DB search
MKHEEYDVMNVENGRPVKMWTKGVPVEDGAKQQLSNAAKMPFIYKHIAAMPDVHVGKGST
IGSVIPTLGAIIPAAVGVDIGCGMMAAKTTLTANDLPDNLGPLRSAIEKAVPHGMSPKTR
GFKGRDEGAWHTPPQPVDAAWSLLKDEFDTICLKTPKLQNTNNYRHLGTLGGGNHFIEVC
LDEVGFVWFMLHSGSRGVGNAIGSHFIELAKQDMRTHFINLPDQDLAYLCEGTQHYNDYV
EAVGWAQRFARTNREVMMLNLIAAVRTVITKPFETHVEAVNCHHNYVQKEQHFGQDVLIT
RKGAVSARAGELGIIPGSMGAKSYIVRGKGNPESFNSCSHGAGRTMSRTEAKRRFNLDDQ
VKATQGVECRKDVNVIDEIPMAYKDIDAVMHAQRDLVEVVHTLKQVVCVKG
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atgaaacacgaagaatatgatgtcatgaacgttgaaaatgggcgtccggtaaaaatgtgg
accaagggcgtgccggtcgaggacggggcgaagcaacagctgagcaacgcggccaagatg
cccttcatctacaagcacatcgcggcgatgcccgacgtgcacgttggcaagggctcgacc
attggaagcgtgattcccaccctgggcgcgattattccggccgccgtgggcgtcgacatt
ggttgcggcatgatggccgcgaagacgacgctgaccgcgaacgacctgccggacaatttg
ggaccgttgcggagcgccatcgagaaggccgtgccgcatggcatgtcgccgaagacgcgc
ggcttcaaggggcgcgacgagggggcgtggcatacgccgccccagccggtcgatgcggcg
tggtcgctactgaaggacgagttcgacacgatctgcctgaaaacgccgaagttgcagaac
acgaacaactaccgccacctgggcacccttggcggcggcaaccatttcatcgaggtgtgt
ctggatgaagtgggatttgtctggttcatgttgcattcggggtcgcgcggcgtgggcaac
gccatcggctcgcatttcatcgaactggcaaagcaggacatgcgcacccatttcatcaat
ctgccggaccaggacctggcctacctgtgcgagggaacgcagcactacaatgactacgtc
gaggcggtcggctgggcccagcggttcgcccgtaccaatcgcgaagtgatgatgctgaac
ctgatcgcggccgtgcgcaccgtcatcaccaagccgttcgagacgcacgtggaggcggtc
aattgccaccacaactatgtgcagaaggagcagcattttggccaggacgtgctgatcacc
cgcaagggggccgtgtcggcgcgggccggcgagctgggtatcattcccggttcgatgggc
gcgaaaagctatatcgtgcgtggcaagggcaatccggaaagcttcaacagttgcagccac
ggcgccgggcggaccatgagccgtaccgaagccaagcggcgtttcaacctggacgaccag
gtcaaggcgacgcagggcgtggagtgccgcaaggatgtcaatgtgatcgatgagatcccg
atggcatacaaggatatcgacgcggtgatgcacgcgcagcgcgatttggtggaggttgtg
cacaccttgaagcaagtggtgtgcgtgaagggctag
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