Ruminococcus bovis: E5Z56_00595
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Entry
E5Z56_00595 CDS
T05998
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ruj
Ruminococcus bovis
Pathway
ruj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ruj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
E5Z56_00595 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ruj03400
]
E5Z56_00595 (mfd)
Enzymes [BR:
ruj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
E5Z56_00595 (mfd)
DNA repair and recombination proteins [BR:
ruj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
E5Z56_00595 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
UB2H
Cas3-like_C_2
MFD_D3
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QCT05953
UniProt:
A0A4V1G4U6
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All DBs
Position
complement(122511..125957)
Genome browser
AA seq
1148 aa
AA seq
DB search
MEFLFDCVAQLKNFQKLNSYAKLKGAVAVTALNSGFKSNIIGTLCHYNDARAFCVAGDEK
EAQVICNDLCMMGFKACVYPQRDFNFREVSGISREYEHQRLKVLTKLLTGECDIVVGTID
ALLQYTIPPEVLKKATLHLKQGQQISTEQCVEALNLLGYERTDMVEGTGQFALRGGILDL
FVPDSENPVRVEFWGDEIDSINHFDILTQRRFDKVDSILLSPSNEILVENKAELSEKIVK
KANLLRSEKTEKAKETLYREAENIANGVNLTILDKYISLIYKKPATVLDYVDEEDFIFIS
EHTNISDRVKSMEFQYKEDMKEYFEDGILCRGLDKFSMDYKEFLEIVNTRHTIFMDNFTS
GHFDLPLSDIVSFNVKQVAPWNGSLTVLCEDLSEFFKERTTVAILAGTEKSGRNLTEELK
EKGFKAQFVTDLKKAEQGNIYVMEGALSTGFELLQTDFHLITYGQSVQKPKRKVQRKKQG
QEIYSLSELNNGDYVVHSTHGIGIFSGIHNLEVQGVKKDYIKITYAKGDVLYVPVTQLDL
VAKYIGPRDNEHVKLSKLGGSEWQKAKTRVRSAVKDMAKELSKLYTERMKAKGYAFSPDG
EWQRDFEAKFMYDETPDQLRCTDEIKGDMERLAPMDRLLCGDVGFGKTEVALRAAFKCVC
DSKQCAILCPTTILAWQHYQTIINRFDGYPIRIELLSRFRTAKQQKEIVEKLKRGEVDIV
VGTHRLVQKDVTFHDLGLAIIDEEQRFGVAHKERFKEICKNVDVLTLSATPIPRTLNMAM
SGIRDMSVLEEAPTNRQPVQTYVLEHEPAILHEAIRRELRRGGQVFYLHNNTESINAKAV
AISEAIPEAKIAVAHGKMSEHELSDIWARMLNQEINVLVCTTIIETGIDLPNANTLIIEN
ADNMGLSQLHQLRGRVGRSSRRAYAYFTFNPHKVLSDISQRRLNAIREFTEFGSGYKIAM
RDLELRGAGNILSGQQHGHMEDVGYDMYLKLLNEAVKEEKGEIKPTDTNECTVDIQMDAH
IPESYIESLSLRLDAYKRIADIKTPDDYDDVVDELCDRYGDMPQSVIGLCDIALTRNKAK
ECGIYDIKQSENNIILKVNDLKNPELYKLIGNANGKAILTPSENPYITLKVDKNKNGLSA
LTELFWEK
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atggaatttttatttgattgtgttgcacagttaaagaattttcaaaaactaaattcttat
gcaaagttaaaaggtgcagttgcagtaactgcacttaattcaggttttaaatcaaatatc
ataggaacgctctgtcattataacgatgccagagctttttgtgttgccggtgatgaaaag
gaagcacaagttatttgtaatgacctatgtatgatgggcttcaaggcttgtgtttatcct
caaagggactttaattttagagaagttagtggtatttccagggaatacgaacaccaaaga
ttaaaggtgcttacaaaacttttaacaggtgaatgtgatattgtggtaggtacgattgat
gcattacttcaatatactattccaccggaagtattgaaaaaagctacacttcacctaaag
caaggtcagcaaatctctacagaacaatgtgtagaggctcttaatttgcttggttacgaa
agaactgatatggttgagggtacaggtcaatttgcactgagaggtggtattcttgattta
tttgtaccggatagtgaaaaccctgttcgtgtagagttttggggtgatgaaattgactct
atcaaccatttcgatattcttactcaaagaagatttgacaaggtagatagtattttactt
tccccatcaaatgaaattcttgtggaaaacaaagcagaactttctgaaaaaatagttaag
aaagctaatttattaagaagtgaaaaaaccgaaaaagcaaaggaaactctctatagagag
gctgaaaacattgctaatggtgtaaacctaactatccttgataagtacatttctttaata
tacaagaaacctgctactgtccttgattatgttgatgaagaagattttatctttataagt
gaacacaccaatatttccgatagagtaaagtctatggaatttcagtataaagaggatatg
aaagaatactttgaagatggtattctttgcagaggtcttgataagttctcaatggactat
aaggaattcctggaaattgtaaacaccagacatacaatttttatggataactttacaagt
ggtcattttgatttacctttaagtgatattgtttcatttaatgtaaagcaagtagcacct
tggaatggttcattaactgtactttgtgaagatttaagtgaattctttaaggaaagaact
actgttgcaattcttgcaggtacggaaaagtccggtagaaatcttacagaagaattaaaa
gaaaaaggttttaaagcacagtttgtaacagatttgaagaaagcagaacaaggcaatatt
tatgttatggaaggtgctttgtcaacaggttttgaattattacaaacagacttccaccta
ataacatatggtcagtcagtacaaaagcctaagagaaaagtacagagaaaaaagcaaggt
caagaaatttattctttatcagaattaaacaatggtgactatgtagtacattcaacccat
ggtataggtatatttagtggtattcataacctagaagtacaaggtgtaaagaaagactat
atcaaaatcacttatgcaaaaggtgatgtactttatgtaccggtaactcagcttgatttg
gtagcaaaatacattggacctagagataatgaacatgtaaagttatctaaactaggtggc
agtgaatggcagaaagcaaagaccagagttcgttcagcagtaaaggatatggctaaggaa
ctttctaagctatatacagagcgaatgaaagcaaaaggttatgctttttcacctgacggt
gagtggcaaagagactttgaagctaagtttatgtatgatgaaacacctgaccaattgcga
tgtactgatgaaatcaaaggtgatatggagcgacttgctccaatggatagattactttgt
ggtgatgttggttttggtaaaaccgaagttgcattaagagcagcctttaagtgtgtatgt
gacagtaaacaatgtgcaattctttgtccaacaacaattcttgcatggcaacattatcag
actattattaatagatttgacggttatccaattagaattgagcttctaagtagatttaga
actgcaaaacaacagaaagaaattgttgaaaagctaaagcgtggtgaagttgatattgta
gttggtactcatagactggtacaaaaggatgttactttccacgacttaggacttgcaatt
attgatgaagagcagagatttggtgttgctcataaagagagatttaaggaaatctgtaaa
aatgttgatgttcttactttgtcagctacacctattccacgaacacttaatatggctatg
agtggtattcgtgatatgtctgtattggaggaagctccaaccaacagacaaccggtacaa
acctatgtgttggaacatgaacctgcaattctccacgaagcaattagaagagaactaagg
cgtgggggacaggttttctatcttcataacaatacagaaagtatcaacgcaaaggcagtt
gcaatttcagaggctattcctgaagcaaaaattgcagttgctcatggtaaaatgtctgaa
catgaattgtctgacatttgggcaagaatgttgaaccaagaaatcaatgtgcttgtatgt
accacaattattgaaacaggtattgacttaccaaatgcgaataccttaataattgaaaat
gctgataatatgggactttctcaacttcatcagttaagaggtagagtaggtagaagtagc
cgtagagcctatgcttactttacatttaaccctcacaaggtgctttctgatattagccaa
agaagacttaatgcaattagagagtttactgagtttggcagtggttacaagatagcaatg
cgtgaccttgaacttagaggtgcaggtaatatcctaagtggtcaacaacatggtcatatg
gaggatgttggttatgatatgtatctaaaactacttaatgaagcagttaaggaagaaaag
ggagagattaaaccaaccgatacaaatgaatgtactgttgatattcagatggatgcccat
attcctgaaagctatattgaaagtctatctctaagacttgatgcttataaacgaatagca
gatataaaaactcccgatgactatgatgatgtagttgatgaactttgtgacagatatggt
gatatgccacaatcggtaataggtctttgtgatattgcattaacaagaaacaaagcaaaa
gaatgtggtatctatgatattaagcaaagtgaaaacaatattatattgaaagtaaacgat
ttgaaaaatccggaactttataaattaataggcaatgctaacggcaaagctatattaaca
ccatcagaaaacccatatattacacttaaagttgacaagaataaaaacggtcttagtgct
ttaacagaattattctgggagaaataa
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