Ruminococcus bovis: E5Z56_06495
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Entry
E5Z56_06495 CDS
T05998
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ruj
Ruminococcus bovis
Pathway
ruj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ruj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
E5Z56_06495 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ruj03021
]
E5Z56_06495 (rpoC)
03400 DNA repair and recombination proteins [BR:
ruj03400
]
E5Z56_06495 (rpoC)
Enzymes [BR:
ruj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
E5Z56_06495 (rpoC)
Transcription machinery [BR:
ruj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
E5Z56_06495 (rpoC)
DNA repair and recombination proteins [BR:
ruj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
E5Z56_06495 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QCT07033
UniProt:
A0A4V1G554
LinkDB
All DBs
Position
1391306..1394851
Genome browser
AA seq
1181 aa
AA seq
DB search
MENNTFDSIKIGLASPDQIREWSYGEVKKPETINYRTLKPERDGLFCERIFGPTKDWECH
CGKYKKIRFKGKICDRCGVEVTRSKVRRERMGHIELAAPVSHIWYFKGIPSRISLMLDIS
PKALEQVLYFASYIVIDPGEAREISKMQILTETEYRDLYEKYEDDFRAGMGAEAIKELLT
EIDLDQLYTQITTDLEGASGQKRVRLLKRLEVVESFRQSGNRPEWMILDVVPVIPPDIRP
MVQLDGGRFATSDLNDLYRRVINRNNRLARLLELQAPDIIIRNEKRMLQEAVDSLIDNGR
KGRPVTGPNNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKMYQCGLPKE
MALELFKPFVMKRLVETKAVVNIKAARKAVERAKPEVWDALEVVIKGHPVLLNRAPTLHR
LGIQAFEPVLVEGRALKLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARFLMLAAGNLL
KPSDGRPVCVPTQDMILGSYYLTLDKDGEKGEGKVFRDVDEAMMAYQTGYLTLHSKIKVR
MTKEFNGVKESGLVDTTVGKIIFNNPIPQDLGFVDRSLEENKFKLEIDFLVGKKQLGKII
DACIRVHGTQTTSVVLDHIKAQGYKYSTRGAITVAVCDAKIPPEKKAIISAAEEQVDGIR
NEYMMGFLSNDERYQNVLKVWEKATDDVTAKLQDNLDRFNPIYMMADSGARGSMSQIRQL
AGMRGLIANTSGKTIEIPIRANYREGLNIMEYFISSRGARKGLADTALRTADSGYLTRRL
VDVSQDVIIREDDCHTDEGLEIFDIKSGNNVIEGLRERLIGRYLVHDFCDENGNVLVSKD
KMMGEEEADIIVNAGTEEIEIRSILGCHCKHGVCRKCYGSNLANGQPVTVGEAVGIIAAQ
SIGEPGTQLTMRTFHTGGVASAEDITQGLPRVEELFEARKPKSLAIISEIDGEVRFEEIK
KARHAVVYNKATGEERQYLIPFGFRVNVEEGQVIKAGDKITDGAIYPADILSILGPKAVQ
NYLISEVQSTYRLQGVDINDKHIEVIVRQMMKKVKIEDSGSTSFMAGQNYDRNEVLYENK
MIEERIKNGEEGLKPAKYTQLLLGITKAALATDSFLSAASFQETTRVLTDAAIKGKVDPL
VGLKENVIIGKLIPAGTGMHRYNGVELEENYVQPQQVQPLD
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atggaaaacaatacatttgattcaattaaaattggtcttgcctcccctgaccagattaga
gaatggtcatatggtgaagttaagaaaccagaaacaattaactacagaacattaaagcct
gagagagacggtctattctgtgaaagaattttcggacctactaaggactgggaatgtcac
tgtggtaaatataagaaaatccgttttaaaggcaaaatttgtgatagatgtggtgttgaa
gttacaagatccaaggtccgtagagaaagaatgggtcatattgaactagctgctcctgta
tcacacatttggtactttaagggtattccttcaagaatttccctaatgcttgatatttct
cctaaagccctagaacaggttctatactttgcatcttacattgttattgatccgggtgaa
gctagagaaatctctaaaatgcagattcttactgaaacagaatacagagatttgtatgaa
aagtatgaagatgactttagagcaggtatgggtgctgaagctatcaaggaacttctaaca
gaaatcgaccttgaccagctatatactcagattactactgatcttgaaggtgcatcaggt
cagaagagagttagacttctaaagagattggaagttgttgaatcattccgtcagtcaggt
aacagacctgaatggatgattcttgatgttgttcctgttattccaccggacatcagacct
atggttcagcttgatggtggtagatttgcaacatctgaccttaatgacctatatagaaga
gttattaacagaaacaaccgtcttgcaagactacttgaactacaagctcctgatattatt
atcagaaacgaaaagagaatgctacaggaagctgttgactcactaattgacaacggcaga
aagggcagacctgttacaggtcctaacaacagacctcttaagtcactatctgatatgcta
aagggtaagcaaggtcgtttccgtcagaacctactaggtaagcgtgttgactactcaggt
cgttcagttatcgttgttggtcctgaactaaagatgtatcagtgtggtcttcctaaggaa
atggcacttgaactatttaagcctttcgttatgaagagacttgtagaaacaaaggctgtt
gtaaatattaaggctgcaagaaaagcagttgaaagagcaaagcctgaagtttgggatgca
cttgaagttgttatcaagggtcatccggttcttttaaaccgtgctcctacacttcataga
cttggtattcaggcatttgaacctgtacttgttgaaggtcgtgctttaaagctacatcca
cttgtatgtactgcttacaacgctgacttcgatggtgaccagatggctgtccatgtacca
ctatctgcagaagctcaggctgaagcaagattcctaatgcttgctgccggtaacctacta
aagccttctgatggtcgtcctgtttgtgtacctacacaggatatgattcttggttcttat
tacctaacacttgataaggacggagaaaagggtgaaggtaaggtatttagagatgttgat
gaagctatgatggcttatcagacaggttacctaacacttcattctaagattaaggttaga
atgactaaggaattcaacggtgttaaagaatcaggcctagttgatacaacagttggtaag
attattttcaataacccaattcctcaggatctaggctttgttgacagaagtttggaagaa
aacaaatttaaattagaaatcgacttccttgtaggcaagaaacaacttggtaagattatt
gatgcttgtatcagagtacacggcacacagactacttcagttgttcttgaccatatcaag
gctcaaggttataaatattcaacaagaggtgctatcacagtagctgtttgtgatgctaag
attccacctgagaagaaagcaattatctcagctgcagaagaacaagttgatggtatccgt
aacgaatatatgatgggtttcctatcaaacgacgaacgttaccaaaatgttcttaaagtt
tgggaaaaagctactgatgatgttactgcaaaactacaggataacctagatagattcaac
ccaatctatatgatggctgactctggtgctcgtggtagtatgtcacagattcgtcagcta
gccggtatgcgtggtttgattgccaacacatcaggtaaaacaattgaaatccctatcaga
gctaactaccgtgaaggtctaaacatcatggaatactttatttcttccagaggtgctcgt
aagggtctggccgatactgctctaagaactgccgactcaggttacctaacaagaagactt
gttgacgtttctcaggatgttattattcgtgaagatgattgtcatactgatgaaggtctt
gaaatcttcgatattaagtcaggtaacaatgttatcgaaggtcttcgtgaaagacttatc
ggtagataccttgttcatgacttctgtgatgaaaatggcaatgttcttgtatctaaggac
aagatgatgggcgaagaagaagctgacattattgttaatgccggtacagaagaaatcgaa
atcagaagtatccttggttgtcattgcaagcatggcgtatgtagaaagtgctacggttct
aaccttgcaaacggtcagcctgttactgttggtgaagctgttggtattatcgcagctcag
tcaatcggtgaacctggtactcagctaacaatgagaacattccacaccggtggtgttgct
tctgctgaagatattacacagggccttccaagagttgaagaactatttgaagccagaaag
cctaagtcacttgctattatttctgaaatcgatggtgaagttagatttgaagaaattaag
aaggctcgtcacgcagttgtttataataaggcaacaggtgaagaaagacagtacctaatc
ccattcggctttagagtaaatgttgaagaaggtcaggttatcaaggccggtgacaagatt
actgatggtgctatttatccggctgatattctttcaatccttggtccaaaggctgttcag
aactacctaatctctgaagtacagtcaacataccgtctacagggtgttgatattaacgat
aagcatatcgaagttattgttcgtcagatgatgaagaaggttaagattgaagacagtggt
tctactagctttatggcaggtcagaactatgaccgtaacgaagttctttacgaaaacaag
atgattgaagaaagaattaagaacggtgaagaaggtcttaaacctgctaagtatactcag
ttacttcttggtattacaaaggcagctcttgctactgattcattcctatcagctgcttca
ttccaggaaacaacaagagttcttacagatgctgctattaagggtaaggttgacccactg
gtaggtctaaaagaaaatgttatcattggtaagctaattcctgccggtacaggtatgcac
agatacaacggtgttgaactggaagaaaactatgttcagccacagcaggtacagccactt
gactaa
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