Ruminococcus bovis: E5Z56_11055
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Entry
E5Z56_11055 CDS
T05998
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ruj
Ruminococcus bovis
Brite
KEGG Orthology (KO) [BR:
ruj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ruj03032
]
E5Z56_11055 (topA)
03400 DNA repair and recombination proteins [BR:
ruj03400
]
E5Z56_11055 (topA)
Enzymes [BR:
ruj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
E5Z56_11055 (topA)
DNA replication proteins [BR:
ruj03032
]
Prokaryotic type
DNA Topoisomerases
E5Z56_11055 (topA)
DNA repair and recombination proteins [BR:
ruj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
E5Z56_11055 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Auto_anti-p27
Zn_ribbon_recom
HypA
Toprim_4
DNA_ligase_ZBD
Zn_ribbon_RPB9
HVO_2753_ZBP
Motif
Other DBs
NCBI-ProteinID:
QCT07859
UniProt:
A0A4P8Y022
LinkDB
All DBs
Position
complement(2338855..2340933)
Genome browser
AA seq
692 aa
AA seq
DB search
MSNLVIVESPAKAKTIKKYLGKDYEVVASMGHVRDLPKARLAVDIKKNYAPKYAIIKGKE
KLVDELKSLAKDSDKIYLATDPDREGEAISWHLAYILGLDLEDKNRVEFNEITKTGVNNG
MANPRSIDIDLVNAQQARRILDRLVGYKLSPFVSQKIRRGLSAGRVQSVALKIIVDRENE
IRAFKPEEYWSIEAKLSPKSSRKVFNASLALGPDGKKIKINNKEEADKILEEIKDAEFIV
TKVRNGTRKKSPYPPFITSTLQQEASRKLGYQSRRTMKIAQELYEGVDVEGYGTTGLITY
MRTDSLRISNDAVAEVTQYINDNFGPEYLPPKPRVFKSRSNAQDGHEAIRPSIPSLSPDK
VKDSLTIEQYKLYKLIWDRFTACQMADCIHKTTQAEINANDYIFKASGYRVDFDGYTTLY
VDSNDAEGTKEKQLPPLEKNMPTKVREIIPNQHFTQPPARFTEASLIKALEENGIGRPST
YAATISTITSREYVKREAKSLVPTELGEALVTLLKERFPKIVNVKFTAQMEEDLDKVEHG
DEQWVELLDNFYVDFDKTLKKAKEDMEGVKIKLKEDETDIVCENCGRKMVVKVGRYGKFI
ACPGYPECKNIKKFVEKIGVQCPECGGDVITRKTKKGKVFYGCSNYPDCNYMSWYEPVNE
KCPQCGKILYKKKGKKQTIFCATEGCGYTKDQ
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaatttagtaatagtggagtctcctgctaaggctaaaacaatcaaaaaatatctt
ggaaaagattatgaagttgtagcatcaatgggtcatgttcgtgacctaccaaaggctaga
cttgctgttgatataaagaaaaattatgctcctaaatatgcaatcatcaaaggtaaagaa
aagttagttgatgaactaaagtcacttgcaaaagacagtgacaagatttatcttgcaact
gacccggaccgtgaaggtgaggctatttcttggcatttagcatatattttaggacttgat
ttagaagataaaaatagagttgaatttaacgaaattactaagacaggtgtcaataacggt
atggcgaaccctcgttctattgacattgaccttgttaatgctcaacaggcaagaagaatt
cttgacagacttgttggttataagctaagtccatttgttagccaaaagattcgtagaggc
ctttctgccggtagagtgcagtctgtagctcttaagattatcgtagacagagaaaacgaa
atcagagcatttaaaccggaagaatattggtcaattgaagcaaaactttctccaaagtca
agcagaaaagttttcaatgcatctttagcacttggacctgacggtaagaaaattaagatt
aataataaagaagaggctgacaagattcttgaagaaatcaaggatgctgaatttattgtt
acaaaagtaagaaacggtactcgtaaaaagtcaccatacccaccatttattacttcaact
ttgcaacaggaggcatctcgtaaacttggttatcagtcaagaagaacaatgaaaattgct
caggaactttatgaaggtgttgatgttgagggctatggtacaacaggtcttatcacatat
atgagaactgactcattaagaatttctaatgatgccgttgcagaagtaactcagtatatt
aatgataactttggacctgaatatttaccaccaaagccaagagtgtttaaatctcgttca
aatgctcaagatggtcacgaagctattcgaccatctattccatcattgtcacctgataag
gttaaggatagcttaactattgaacagtataagctatataaactgatttgggatagattt
actgcttgtcagatggctgattgtatccacaaaacaactcaagcagaaatcaatgccaat
gactatatctttaaggcatcaggttacagagttgactttgacggttatacaacactttat
gttgacagtaatgatgctgaaggtacaaaggaaaagcagcttcctccactagagaagaat
atgcctactaaggttagagagattatccctaaccagcactttactcagccacctgcaaga
tttacagaagcgtctctaatcaaagcacttgaagaaaacggtattggccgtccatcaaca
tatgctgcaacaatctcaacaattacaagtagagaatatgttaaaagagaagcaaagtcc
cttgtaccaactgaacttggtgaggcacttgtaactctattaaaagaaagatttcctaag
attgtaaatgttaagtttactgcacaaatggaagaagaccttgataaggttgaacatggt
gacgaacaatgggttgaactacttgataatttctatgttgactttgataagaccttgaaa
aaggctaaagaagatatggaaggtgtcaagattaagctaaaagaggacgaaactgatatt
gtatgcgaaaactgtggcagaaagatggtcgtcaaagtcggtagatacggtaagtttatt
gcttgtccgggataccctgaatgtaagaatatcaagaagtttgtagagaaaatcggtgtt
caatgtcctgaatgtggtggagatgttattactcgtaaaaccaagaaaggtaaagtgttc
tacggctgtagtaactaccctgattgtaactatatgtcttggtatgaacctgtaaatgaa
aagtgtccacagtgtggcaagattctatataaaaagaagggcaaaaagcagacaatcttc
tgtgcaactgagggttgtggctatactaaagaccaatga
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