Hungateiclostridiaceae bacterium KB18: A4V00_00500
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Entry
A4V00_00500 CDS
T04437
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ruk
Hungateiclostridiaceae bacterium KB18
Pathway
ruk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ruk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A4V00_00500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ruk03019
]
A4V00_00500
03400 DNA repair and recombination proteins [BR:
ruk03400
]
A4V00_00500
Enzymes [BR:
ruk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A4V00_00500
Messenger RNA biogenesis [BR:
ruk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A4V00_00500
DNA repair and recombination proteins [BR:
ruk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
A4V00_00500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
RQC
DEAD
HRDC
RecQ_Zn_bind
ResIII
Cas3-like_C_2
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
ANU52621
UniProt:
A0A1C7GL60
LinkDB
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Position
complement(103095..104933)
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AA seq
612 aa
AA seq
DB search
MEKLSLLKTFFGHDKFRTGQELLIDALLSGRDVLGVMPTGAGKSVCYQLPALMLPGITLV
ISPLISLMKDQVGALLQSGVPAAYLNSSLSQEEYYQVMAGVRRGEYKLLYVAPERLLAEG
FLSLAKRTPISLLAVDEAHCVSQWGQDFRPSYLQIPEFIKALPKRPVLGAFTATATRQVK
ADIARLLLLKEPLGVTTGFDRPNLFFSVERPKNKAAWLCSFLRSRPQESGIVYCSTRKQV
EAIYEMLGARGIAAARYHAGLSDEERRMNQEEFVNDRVRVMAATNAFGMGIDKSNVSFVV
HYNMPKDIESYYQEAGRAGRDGSNAQCVLLFSPGDVNTAKYLIFNSQDNESLTEAEQDIL
RQRDMERLDKMTGYCKTAGCLRSYLLEYFGEETLGECGSCGNCQKGLESRDITVEARKIL
SAVARAQRKYRRGIGAGSIALMLVGSREQKVSRLGLDRLSTYGIMKDVDRGLIRDYMDFL
IQEGYLCTEGGEYPVVRLGANARGVLSGEERVTYLYRKTEWAENVSAAAAKVQEGGPLYE
ELRALRRQLAQAAGIPPYMIFSNAALEDMARRRPRDMEGFLMVSGVGEVKAKKYGKAFLQ
KLREWEEKEQEG
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaattatctctattgaagacgtttttcggccatgacaagttcaggaccgggcag
gagttacttatagacgccctgctttccggccgggacgtgttgggggtaatgcccacaggg
gcgggcaagtcggtatgctatcagctgccggccctgatgctgccggggatcactctggtg
atatccccgcttatctctctgatgaaggatcaggtgggggcccttttacagtccggcgta
ccggcggcgtacctcaattcctccctgtcacaggaggagtattatcaggttatggctgga
gtgcggcggggggagtacaagctcttatacgttgcccccgagagactgctggccgaagga
ttcctgtcccttgcaaaaaggacgcccatatccctgctggcggtggacgaggcccactgt
gtctcccaatggggccaggattttaggcccagctacttacagatacctgagttcatcaaa
gcccttccaaagcgcccagtgcttggggcctttacggccacagccacccggcaggtgaag
gcggacatagcaaggctccttctgctaaaggaaccgctgggggtgaccaccggctttgac
cgtcccaacctgtttttcagcgtggaaaggcccaaaaataaagccgcttggctttgcagc
tttttgaggtctcgcccacaggagagcggcatagtctactgctccacacgcaagcaggta
gaagctatctacgagatgctgggagcaaggggcatagccgccgcccggtaccacgcgggg
ctctccgacgaggagcgccgcatgaaccaggaggaatttgtaaacgacagggtacgggtt
atggcggcaacaaacgcttttggtatgggcatagacaagtccaacgtgagctttgtggtg
cattataacatgccaaaggatatagagagctattatcaggaggccggtcgggcgggccgg
gacggttccaacgcccaatgtgtgctgctgttttccccgggcgacgtgaacacggcaaag
tatcttatatttaactcccaggataatgagagtctgacagaagcggagcaggacatactg
cgccaaagggatatggagcgcctagataaaatgactggctactgcaaaacggctggatgt
cttaggtcctaccttctggaatatttcggagaggagaccctcggggagtgcggcagctgc
ggaaactgccaaaaggggcttgagagccgggatatcactgttgaggcccggaaaatacta
tcggcagtggccagagcacagcgcaaataccgccgtgggattggtgccggttccattgcg
cttatgctcgtgggaagcagggaacagaaggtctccaggctgggccttgaccggctgtcc
acatacggcataatgaaggacgtggaccgggggcttatccgggactacatggactttctg
atacaggagggttatctctgcaccgagggaggtgaatacccggtggtgcgccttggcgca
aacgcccggggagtgctgtcgggggaggagcgcgtgacttatctatacagaaagaccgaa
tgggccgagaacgtctctgccgctgcggcgaaggtccaggagggcggtccgctgtatgag
gagcttcgggcccttcggcggcagttggcccaggccgcggggataccgccgtatatgata
ttcagtaacgcagccctggaggatatggcccgacgcaggccaagggatatggaaggattt
cttatggtctccggcgtgggggaggtcaaggccaaaaagtacggcaaggcctttctccag
aagctcagggagtgggaagagaaggaacaggagggatag
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