Roseimaritima ulvae: UC8_22860
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Entry
UC8_22860 CDS
T06179
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
rul
Roseimaritima ulvae
Pathway
rul02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
rul00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
UC8_22860 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rul03021
]
UC8_22860 (rpoD)
Transcription machinery [BR:
rul03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
UC8_22860 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
KORA
TY-Chap3
HTH_10
Rv2175c_wHTH
Motif
Other DBs
NCBI-ProteinID:
QEG40279
UniProt:
A0A5B9QQU8
LinkDB
All DBs
Position
complement(3151968..3152939)
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AA seq
323 aa
AA seq
DB search
MPELEPAIAAWRNSQVRAVPLEGDILRRSASAIASEEIGFIGNRGFGDPDAGQRIFAAPL
ELQPVQNPPSRPAMRISDLPRHLSRLCEAPLITPDQERLLFERMNFLRHQANQHRSRLDP
KRPAKTRIELIRKLLFLADWHRDRIVEANLRLVFSIVKKFTNQHNRFDDLLSDGIVALMR
AADKFDFERGFRFSTYATQVVRRDAYRSVVTTRDERQKVSSGLQDMEIDVSDEIRQPNMS
ESRWHLLRSRLASMLGDLDRREKLIIRARFALGSHRRVQTLQSLASRLGVSKERVRQLER
RALDKLTAMAVDAGYQDVEQGMV
NT seq
972 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaactcgaacctgccattgcagcatggcggaacagtcaagtgcgcgccgtgccg
ctcgaaggtgatattctgcggcgctctgcgtctgcgatcgccagcgaagaaattggcttt
atcggcaatcgcggattcggcgaccctgacgcgggacagcggatttttgccgctccgctg
gaactgcaaccggtacaaaatcctcccagtcgcccagcgatgcgaatcagcgacttgccg
cggcacctgagccgactgtgtgaggcaccattgattacccccgaccaagaacggctgttg
tttgagcggatgaactttctgcggcatcaagccaatcagcatcgctcgcgactggacccc
aagaggcctgccaaaacgcgaatcgagttgattcgcaaattgctgttcctggccgattgg
caccgcgatcggatcgtcgaagccaatctgcgtttggtattctcgattgtcaaaaagttt
accaaccaacacaatcgctttgacgacctgctgagcgatgggattgtggctttgatgcga
gctgcggacaaattcgatttcgaacgcggcttccgcttcagcacctacgcgacccaagtc
gtccgtcgcgatgcctaccgcagtgtcgttaccactcgcgacgaacgccaaaaggtatcc
agtggtctgcaggacatggaaatagatgtcagcgatgaaatccgccaaccgaatatgagc
gaatcgcgatggcatctacttcgcagtcgcttagccagcatgctcggggacctggaccgg
cgcgagaaactgattatccgcgcacgtttcgcgttgggctctcatcgtcgcgtacagacg
ctgcaaagccttgccagtcggttaggagtttctaaagagcgggtccgtcagttggaacgc
cgggcgttggataagttaaccgccatggccgtcgatgcaggctatcaggacgtcgaacag
ggtatggtgtaa
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