Roseimaritima ulvae: UC8_42300
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Entry
UC8_42300 CDS
T06179
Symbol
rhlE_3
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rul
Roseimaritima ulvae
Pathway
rul03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UC8_42300 (rhlE_3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rul03019
]
UC8_42300 (rhlE_3)
Enzymes [BR:
rul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
UC8_42300 (rhlE_3)
Messenger RNA biogenesis [BR:
rul03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
UC8_42300 (rhlE_3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HEM4
Cas3-like_C_2
Utp25_C
CMS1
Peripla_BP_1
ERCC3_RAD25_C
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
QEG42196
UniProt:
A0A5B9QYH5
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All DBs
Position
complement(5829783..5831018)
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AA seq
411 aa
AA seq
DB search
MDLFAPLKRALAEQNYEQPTPIQAQTIPAAIAGQDVLGCAQTGTGKTAAFALPILDYLGH
EPQQPTPGRPNALVLAPTRELAIQISESFEVYGKHVKFRQALVYGGVGQGEQVRALRRGA
DVLIATPGRLLDLMEQGHINLSEVEMFVLDEADRMLDMGFLPALKKIIADLPRERQSLFF
SATLAPKIRELASQLLFNPISVNVTPKTTSVEQIEQSVRLINRGEKLASLRDLLGSDQVE
QSIVFTRTKHGANGLSKKLARAGISAAAIHGNKTQNARQQALTAFRNKRVNVLVATDVAA
RGIDIDGISHVINYDMPVEPESYVHRIGRTGRAGADGIAISFCTSDERDKLQAIEKWIGQ
SLRIENPDAKLDPPQPAPSKPRRRGGSGNRNHSGGNRSNGRNRSRKASSFA
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atggatttgtttgctccgctgaagcgtgcgctggcggaacaaaactacgaacagcccact
ccgattcaagctcaaacgattcccgcggcgattgccgggcaagatgtgctcggatgcgcg
caaaccgggaccggaaagacggccgcatttgcgttgccgattttggattacttgggccac
gaaccgcagcagcccacgccgggccgccccaacgctttggtgctggcgccgacgcgcgag
ctggcgattcagatcagtgaaagctttgaggtgtatggcaaacacgtcaagttccgtcag
gcacttgtctacggtggtgttggccagggcgaacaggtccgggcgctacgccgcggcgcc
gatgtgctgatcgctacgcccggtcgcctgttggatttgatggaacagggccatatcaac
ctttccgaagtggaaatgtttgtcctcgacgaagccgatcggatgttggacatgggcttt
ctgccggcgctaaagaagatcattgccgacctgccgcgcgaacgtcagtcgctgttcttc
tcggccaccttggcacccaaaattcgcgagctggcctcgcagttgttgttcaatccgatc
tcggtcaacgtcacgcccaagacgaccagcgtggaacagatcgaacagtcggtgcgactg
atcaaccgcggtgaaaaactggcttcgctccgcgatctgctgggcagtgaccaggtggag
caatcgatcgtgtttactcgtaccaaacacggcgctaatgggctgagcaaaaaactggct
cgagccgggatttcggctgcagccatccacggcaataaaactcagaatgcccgccaacag
gcgctgaccgcttttcgcaataaacgcgtcaatgtgctggttgctaccgacgtggcggcc
cgcgggatcgacatcgatggcatcagccacgtgatcaattatgacatgcccgtcgaaccg
gaaagctacgtgcatcggatcggccgaaccggtcgcgccggcgccgatgggatcgccatc
tcgttctgcacatccgacgaacgtgacaagttgcaggccatcgaaaaatggatcggccag
tcactgcgaatcgaaaaccccgatgccaaactcgacccgccgcaaccggcccctagcaag
ccgcgtcgccgtggcggttccggcaatcgcaatcacagtggtggcaaccgcagcaatggc
cgcaatcgaagtcgtaaagcgtctagcttcgcttag
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