Roseimaritima ulvae: UC8_43940
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Entry
UC8_43940 CDS
T06179
Symbol
hrpB_1
Name
(GenBank) ATP-dependent RNA helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
rul
Roseimaritima ulvae
Brite
KEGG Orthology (KO) [BR:
rul00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rul03019
]
UC8_43940 (hrpB_1)
Enzymes [BR:
rul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
UC8_43940 (hrpB_1)
Messenger RNA biogenesis [BR:
rul03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
UC8_43940 (hrpB_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
HA2_C
AAA_19
Motif
Other DBs
NCBI-ProteinID:
QEG42360
UniProt:
A0A5B9QX31
LinkDB
All DBs
Position
complement(6080804..6083395)
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AA seq
863 aa
AA seq
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MTRVPAELPIVQVLADVLRGLTSASTVVLKAPPGAGKTTGVPIAIDEAGLLNGRMLIAQP
RRLAARAAAARIADLVGTRVGDAVGYQVRFDRRWQDSTRIVAVTTGVLLRRLQGDNFLEG
FDAVLLDEFHERSLEADLALGMLLRLQQTVRPDLKLVVMSATLDPQAIADFLSAGGSAVQ
MVESQGRAFPVQVRYGRQLQRSPLEQQIAQLMPNVLAATPGHVLVFLPGVGEIRKTQRQL
QSLPAARGAEILLLYGDLSPDKQDHVLRPSRQRKIVLATNIAETSVTIPGVTAVVDSGLA
RVLRYDADVGLPRLQVEPISNASAEQRAGRAGRTEAGVAWRLWPQAADRGRPEYDTPEVL
RSDLAGAVLQLAGFGETDVAAFPWMDKPSDEAIEFAQALLRRLGALDDFGITSLGKRMLT
LPVHPRLARLLIAGEQLGVAARTAVTAALLSERDPFRAGQLAKSQPIRGGGGRGKGIGKA
PRVGSGGRSDIVDQLNRLERFAEGRDDPAINQAAARQVFRVAEQLARMLDGGTGPQTLTG
DASDTAIMRALLAAYPDRLARRRSRGSDRAIMAAGKGVKLSGESNVRDGDLFLAIDVQQA
TGDAKVRKASAVEFEWLDTADFEQRDECFFHPSLKQIAARRRTYWNGLLLNETPIERADE
TQSQQLLFEHAVRNWERVFPADDPRLQSLLARIRCLRQWNPELDLPACDTLALHDVCLQL
CRGRKSFAELQVAPWGDYVAALLSFEQQQTLDAQAPQRIQVPSGNSIEIEYCEDKPPVLA
VRLQELFGWKETPRIAGGRVPLLLHLLGPNGRPQQVTEDLASFWENTYPQVRKDLRRRYS
KHHWPEDPTAATATRSGLGRDAK
NT seq
2592 nt
NT seq
+upstream
nt +downstream
nt
gtgacgagagtgcccgccgagctgccgattgtgcaggtgctggccgatgtgctgcggggc
ctgacgtctgccagcacggttgtgttaaaagccccgccgggcgcaggcaaaacgaccggg
gtgccgatcgccatcgacgaagctggtttgttaaatggccggatgttgatcgcccagccg
cgtcgcttggcggcgcgcgcggccgccgctcggatcgccgatctggtcggcacccgtgtc
ggcgatgcggttggttatcaggtccgcttcgatcgccgctggcaagacagcacgcggatc
gtggccgtgaccactggggtgctgttgcggcggttgcagggcgacaatttcttggaaggt
tttgatgccgtcctgttagacgaattccatgaacgttccctggaagccgatttggccctg
gggatgttgctgcggttgcagcaaaccgtgcggcccgatttaaaactggtggtgatgagt
gccaccttggacccccaggccatcgccgattttttgtccgccggcggcagcgccgtgcag
atggtggaaagccaaggccgtgcgtttccggttcaggtacgctatggccggcagttgcaa
cgcagcccgctggaacagcagatcgcccagctgatgcccaacgtgctcgcggccactccg
gggcatgtattggtttttctgccgggcgtgggcgaaattcgcaagacccagcgccagctg
cagtccttgccggcggcgcgtggtgcggaaatcctgttgctgtacggcgacctttcgccg
gataagcaagaccatgtgttgcggcccagtcggcaacgcaagattgtgttggcgaccaac
atcgcggaaacgtcggttacgatccccggtgttacggcggtcgtcgacagtggcctggca
cgcgtgctgcggtacgatgccgatgtgggcttgccgcggttgcaggtcgaaccgatttcc
aacgcttcggcggagcaacgtgcagggcgagccggccgtaccgaagcgggggtcgcgtgg
cggttgtggccacaagccgccgaccgcggccggcccgaatacgatacgcccgaagtgctc
cgcagcgatctggccggcgccgtgctgcagttggccgggttcggcgaaaccgatgtggcc
gcgtttccctggatggataaaccgtcggacgaagccatcgaattcgctcaggccctgctg
cgacgactcggcgcgctggatgattttggcatcacttcgctgggcaaacgcatgttgacg
ttgcccgtgcatccgcggttggcgcggctgttaatcgccggcgaacaattgggcgtggcc
gcccgcacggccgttaccgcggccttgctgagtgaacgtgatccgtttcgcgcgggtcaa
ctagccaagtcgcaaccgatccgcggaggtggtggccgaggaaaggggatcgggaaagct
ccgcgagtcggttcggggggacgctccgatatcgtcgaccaactgaatcggctggaacgc
ttcgccgaaggtcgggacgatccggcgatcaatcaagccgccgcccggcaggtgtttcgc
gtcgccgaacaactggccaggatgttggatgggggcaccggaccccagacgctgaccggc
gacgcgtccgataccgccatcatgcgagctctgttggctgcctatccggatcggctggcg
cggcgccgcagtcgtggcagcgaccgagccatcatggcggccggcaaaggtgtcaagtta
agcggcgaatccaacgtccgcgatggtgatctgtttttggccatcgacgtgcaacaggcc
accggcgatgccaaggttcgcaaggcctcggcggtcgaattcgaatggttggataccgcc
gatttcgagcaacgcgatgaatgcttctttcatccttcgctgaagcagatcgcggcccgc
cgccggacctattggaacgggctgctgctgaacgagacgcccatcgaacgagcggacgaa
acgcaaagtcagcagttgttgttcgaacacgcggtccgcaattgggaacgtgtgtttccc
gccgacgatccgcgtttgcagtcgttgctggcccgcatccgctgcttgcggcaatggaat
cccgaactggatttgccggcttgtgacacccttgccctgcacgatgtctgcctgcaactg
tgtcgcggccgcaaaagttttgcggaactgcaggtcgctccctggggcgactatgttgcg
gcgctgctgagttttgaacagcagcaaacgctcgacgcgcaagccccgcagcggatccag
gtgcccagcggcaattcgatcgaaatcgaatactgcgaagacaagccgccggtgttggcc
gtgcggctgcaggaattgtttggttggaaagagacgccgcggattgccggcggccgggtg
ccgctgttgttgcacctgctggggcccaatggtcggccgcaacaggtcaccgaagacttg
gcaagtttttgggagaacacctacccgcaagtccgcaaagacctccgtcgccgctattcc
aagcaccattggccggaagaccccaccgccgccacggccacccgcagcggcctaggccgc
gacgccaagtaa
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