Ruminococcus sp. SR1/5: CK1_00520
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Entry
CK1_00520 CDS
T02601
Name
(GenBank) DNA polymerase III catalytic subunit, PolC type
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
rum
Ruminococcus sp. SR1/5
Pathway
rum03030
DNA replication
rum03430
Mismatch repair
rum03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CK1_00520
03430 Mismatch repair
CK1_00520
03440 Homologous recombination
CK1_00520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rum03032
]
CK1_00520
03400 DNA repair and recombination proteins [BR:
rum03400
]
CK1_00520
Enzymes [BR:
rum01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CK1_00520
DNA replication proteins [BR:
rum03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CK1_00520
DNA repair and recombination proteins [BR:
rum03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CK1_00520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_finger
Rv2179c-like
HHH_6
RNase_H_2
DEDDh_C
Motif
Other DBs
NCBI-ProteinID:
CBL18442
LinkDB
All DBs
Position
29298..32687
Genome browser
AA seq
1129 aa
AA seq
DB search
MDTSPQKRVELHCHTKMSDMDGVSDAKALVKRAYEWGHKAIAITDHGVVQSFPEANHCFD
AWGGCVPKESDFKVLYGMEAYLVDDLKGMVTNSKGQRLDGDFVVFDIETTGFSALTCRII
EIGAVKVEKGQITDRFSTFVNPEVPIPFRIEQLTSINDSMVLDAPVIEEVLPKFLEFCEG
CVMVAHNADFDMSFIIENCKRQGISDDFTYVDTVGMARFLLPALNRFKLDTVAKAVGVSL
DHHHRAVDDAACTAEIFVRFVKMLEERDIFDVDEMNRQGAVSPDTIRKLPTYHAIVFARN
ETGRINLYKLVSQSHLKYYHRRPRVPKSVLEKYREGLLVGSACEAGELYQALLRNAPDQE
IARLVNFYDYLEIQPLGNNAFMLADEKHDMINSEEDLKEINRKIVKLGEQFKKPVVATCD
VHFMDPQDEVYRRIIMAGNGFSDADNQAPLYLRTTEEMLEEFSYLGSEKAEEVVITNTNK
IADMIEKISPIHPDKFPPVIENSEQDLKNICFTKAHEMYGDPLPKIVEDRLDRELNSIIS
NGYAVMYIIAQKLVWKSNEDGYLVGSRGSVGSSLAATMSGITEVNPLPPHYLCPNPDCKY
SDFDSPEVKKYAGMAGCDMPDKICPKCGARMNKEGFDIPFETFLGFKGDKEPDIDLNFSG
EYQANAHRYTEVIFGKGQTFKAGTIGTLAEKTAFGYVKNYYEERGQHKRYCEINRIVKGC
TGVRRTTGQHPGGIIVLPMGEEIEKFTPVQHPANDVNSDIITTHFDYHSIDGNLLKLDIL
GHDDPTMIRMLEDLTGISARTVPLDQRDVMSLFAGTQALGISPEDIGGCRLGCLGIPEFG
TDFAMQMLIDTKPKYFSDLVRIAGLSHGTDVWLGNAQVLIQNGTATISTAICTRDDIMIY
LIGKGVESGLAFTIMESVRKGKGLREEWIQTMKEHDVPDWYIWSCKLIKYMFPKAHAAAY
VMMAYRIAWYKVFHPLAYYAAFFSIRATSFSYELMCMGKERLEYYMAEIRKKGDAASKKE
QDTLKDMRIVQEMYARGFDFVPIDLYKAKAHRFQIIGDKLMPALDTIEGLGDKAAEAVVD
AAAKGRFLSKDDFRDRTKVSKTVIDLMDDMDLFGDIPQSNQMSLFDFTG
NT seq
3390 nt
NT seq
+upstream
nt +downstream
nt
atggataccagtcctcagaagcgtgtggagcttcactgtcacaccaagatgagcgatatg
gatggtgtcagcgatgcaaaggcattggtaaaacgtgcctatgagtggggacataaggct
atcgctatcacggatcatggcgtggtgcagtccttcccggaggcaaatcactgctttgat
gcctggggcggttgtgttccaaaggagtctgattttaaggtgctctatggaatggaagcg
tatctggtagacgatctgaagggtatggtcaccaattccaaagggcagcggctggatgga
gattttgttgtttttgatattgagactacgggattctcagcactaacctgcaggatcatt
gagattggtgcggtaaaagtggaaaaaggacagatcacagatcgtttttccacctttgta
aacccggaagtgcccattccgttccgtattgagcagctgacaagcatcaatgattccatg
gtcctggatgcacctgtgatagaggaagtactgccgaaattcctggaattctgtgagggc
tgcgtgatggtggcccataatgcggactttgatatgagctttattattgaaaactgtaaa
cggcaggggatttcggatgattttacttatgtggataccgttggtatggctagattcctt
cttcctgccctgaaccgttttaaactggatacggtagccaaggcagtaggtgtttctctt
gatcatcaccacagagctgtggatgatgcggcatgtaccgcagagatttttgtgcggttt
gtaaagatgctggaagaaagagatatttttgatgtggatgagatgaacaggcagggtgcg
gtttcaccggataccatccgaaagctgcccacataccatgctattgtttttgcaagaaat
gagaccggaaggatcaatctgtacaagctggtaagccagtcccatttaaagtactatcac
agaagaccaagggttcccaaaagcgtgctggaaaaatacagggaaggccttctggtggga
agtgcctgcgaggcaggagagctttatcaggcacttcttcgcaatgcaccggatcaggag
atcgccagactggtaaatttttatgactatctggaaatccagcctcttgggaacaatgcg
tttatgcttgcggatgaaaaacatgatatgatcaattctgaggaagacttaaaagagata
aaccggaagatcgtaaaacttggagaacagttcaaaaaaccggtggttgccacctgtgat
gtgcattttatggatcctcaggacgaggtttaccgacggatcatcatggcaggaaacgga
ttttctgatgcagataaccaggccccgctttatcttcgtacaacggaggaaatgctggag
gaattttcctatctgggaagtgaaaaggcggaagaggtggtgatcaccaataccaataag
atcgcggatatgatcgagaagatatcaccgatccatccggataaatttccaccggtcatt
gagaactccgagcaggatcttaagaatatctgttttacgaaggcccacgaaatgtacgga
gatccgttgccgaagatcgtggaggaccgtctggacagggagctgaattctattatctcc
aatggttatgcggtaatgtatatcattgcacagaagcttgtgtggaagtccaatgaggac
ggctatctggttggatcccgtggttctgtaggttcttctctggcagcgaccatgtccggt
atcacggaggtaaaccctctgccgcctcattatctctgtccgaatccggactgtaaatac
agtgattttgattcccctgaggtgaaaaaatacgcgggtatggcaggatgtgatatgccg
gataagatttgtccgaaatgcggtgccaggatgaacaaggaaggctttgatattcctttt
gagacattccttggttttaaaggtgataaggagccggatatcgacctgaacttttccggt
gaatatcaggccaatgcccaccggtatacagaggttatcttcggaaaagggcagaccttt
aaggcgggaaccattggtacccttgcggaaaaaaccgcatttggttatgtgaagaactat
tatgaggaacgggggcagcacaagcgttactgtgagatcaaccgtatcgtgaagggctgt
accggtgtccgccgtaccactggccagcatccgggaggtatcatcgtactgcctatgggt
gaggagattgagaaatttacacctgtgcagcacccggccaatgatgtgaacagtgatatc
atcaccacacattttgattaccattccattgacggaaatcttctgaaacttgatatactt
ggacacgatgatccgaccatgatccgtatgctggaggatctgaccggcatcagtgcaaga
acagttccgctggaccagagagatgtcatgtccctgtttgcgggaacgcaggctctgggg
atcagccctgaggatatcggcggctgcaggctgggatgcctcgggatcccggagtttggt
acagactttgccatgcagatgttgatcgataccaagccgaaatatttttccgacctggta
cgtattgctggactttcccacggcacggatgtatggcttggaaatgcccaggtattgatc
cagaatggtacagctaccatttccacagcaatctgtacgcgagatgatattatgatctat
cttatcggaaaaggagtggaaagtggtctggcgtttaccatcatggagagtgtccgtaag
ggaaagggtcttcgtgaggaatggatccagactatgaaagagcatgatgttccggactgg
tatatctggtcctgtaagctgatcaagtacatgttcccgaaagcccatgcggcagcctat
gttatgatggcgtatcgtatcgcctggtataaagtgtttcatccactggcttattatgca
gcatttttcagtatccgtgccacttccttttcctatgaactgatgtgcatgggaaaagaa
cgtctggaatattatatggcggagatccggaaaaaaggtgatgcggcatccaagaaggaa
caggatacactgaaggatatgaggatcgtacaggaaatgtacgccagaggttttgatttt
gtaccgatcgatctttataaggcaaaggcacaccggttccagatcatcggagataaactg
atgcctgctctggataccatagagggtcttggagataaggcagcagaggcagttgtggat
gctgccgcaaaaggcagattcctttccaaggatgatttccgtgatcgtaccaaggtcagc
aagaccgttatcgatctgatggatgatatggatcttttcggagatatcccgcagtccaat
cagatgtcactgtttgattttacgggttga
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