Ruminococcus sp. SR1/5: CK1_00860
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Entry
CK1_00860 CDS
T02601
Name
(GenBank) uncharacterized domain HDIG
KO
K03698
3'-5' exoribonuclease [EC:3.1.-.-]
Organism
rum
Ruminococcus sp. SR1/5
Brite
KEGG Orthology (KO) [BR:
rum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rum03019
]
CK1_00860
Messenger RNA biogenesis [BR:
rum03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CK1_00860
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Paralog
Gene cluster
GFIT
Motif
Pfam:
HD
Cas3_HD
tRNA_anti-codon
HDOD
YbeY
Motif
Other DBs
NCBI-ProteinID:
CBL18470
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All DBs
Position
65290..66237
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AA seq
315 aa
AA seq
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MRFLNELHEGDRVNGIYLCKQKQAATTKNGKPYENLILQDKTGVIDGKIWDPNSLGIDEF
DTLDYIEIMGDVTSFAGAMQLNIKRARKAGEGEYDPADYLPTSENSVDDMQSQLRELINS
VKNPYLSQLLKKLFVEDQEFMKIFEGHSAAKTVHHGFIGGLMEHTLGVTRLCDYMANAYP
LLNRDLLITTALLHDVGKTKELSAFPMNDYTDEGQLLGHIVIGAQMVHDLAKEIPDFPEK
LENQVIHCILAHHGELEYGSPKKPALAEAVALNLADNTDARMETLTEIFHADKGKKEWLG
FNRLFESNLRRTGDI
NT seq
948 nt
NT seq
+upstream
nt +downstream
nt
atgcgttttttaaatgaattacatgagggagacagagtaaacgggatctatctctgcaaa
cagaaacaggcagctacaacgaagaatggcaagccctatgagaatctgatccttcaggat
aaaacaggtgtgatcgatggtaagatctgggatcccaattctctgggaattgatgagttt
gatactcttgattacattgagatcatgggagatgtgacaagctttgcaggcgccatgcag
ctgaatatcaagagagcacgcaaggcaggagaaggggagtatgatccggcagattatctt
cctaccagtgagaacagtgtggatgatatgcagagccagctacgagagcttatcaacagt
gtgaagaatccctatctttcccagcttctgaagaagctctttgtggaagatcaggaattt
atgaagatatttgagggacattctgcagcgaagaccgtacatcatggctttatcggcggg
ctgatggagcacactcttggagtgacccgtctctgcgattatatggcgaatgcatatcca
ctattgaaccgagatcttctgatcacaaccgcacttcttcatgatgtgggcaaaacgaag
gagctttctgcttttccgatgaatgattatacagatgagggacagcttcttggacatatt
gtgatcggggcacagatggtgcatgatcttgcaaaagagatcccggattttccggagaag
cttgaaaatcaggtgatccactgtattcttgcacatcatggtgagcttgagtacggttct
cccaagaaaccggcacttgcagaggcagttgccctgaatctggcagacaatacagatgca
aggatggagacactgacagaaatttttcacgcagacaaaggcaaaaaagaatggcttggt
ttcaaccggctttttgagtccaatttaagaagaacaggagatatttaa
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