Ruminococcus sp. SR1/5: CK1_11670
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Entry
CK1_11670 CDS
T02601
Name
(GenBank) Endonuclease IV
KO
K01151
deoxyribonuclease IV [EC:
3.1.21.2
]
Organism
rum
Ruminococcus sp. SR1/5
Pathway
rum03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CK1_11670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rum03400
]
CK1_11670
Enzymes [BR:
rum01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.21 Endodeoxyribonucleases producing 5'-phosphomonoesters
3.1.21.2 deoxyribonuclease IV
CK1_11670
DNA repair and recombination proteins [BR:
rum03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
CK1_11670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AP_endonuc_2
Motif
Other DBs
NCBI-ProteinID:
CBL19342
LinkDB
All DBs
Position
complement(977509..978114)
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AA seq
201 aa
AA seq
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MILYIGNHTSSSKGYAAMGRQMLKNGGNTFAFFTRNPRGGKAKEIDPADVERFLELSREN
HFGKLVAHAPYTMNACAAKENLRDFAREIMADDLKRMEYTPGNYYNFHPGSHVGQGTETG
ITKIAEILNDVLTEEQSTTVLLETMSGKGSEVGATFQELRDIIDRVEKIINWVSAWIPVM
YGMAVMILSMIWMVFLMSLTG
NT seq
606 nt
NT seq
+upstream
nt +downstream
nt
atgatattatatatcggaaatcatacaagttcgtccaaaggctatgctgccatggggcgt
cagatgctgaaaaacggtggaaacacgttcgctttttttacccgcaatcccagaggaggc
aaggcaaaagagatcgatcccgcagatgtggaaagatttctggagctttccagggaaaat
cattttggaaagctggtggcacatgcaccgtataccatgaatgcctgtgccgcaaaagaa
aatctgagagattttgcaagagagatcatggcagatgatctgaaacgtatggaatataca
ccgggaaattattataattttcacccgggcagtcatgtagggcagggaactgagacggga
attaccaaaattgcggaaatcctcaatgatgtccttacagaagaacagagtacgaccgtc
cttctggaaactatgtccggcaagggttcggaagtaggagcaacgtttcaggagcttcgt
gatatcattgacagggtggaaaaaataataaactgggtgtctgcctggatacctgtcatg
tatgggatggcggttatgatattgtccatgatctggatggtgttcttgatgagtttgacc
gggtga
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