Ruminococcus sp. SR1/5: CK1_18340
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Entry
CK1_18340 CDS
T02601
Name
(GenBank) RNA polymerase, sigma 70 subunit, RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
rum
Ruminococcus sp. SR1/5
Brite
KEGG Orthology (KO) [BR:
rum00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CK1_18340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rum03021
]
CK1_18340
Transcription machinery [BR:
rum03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CK1_18340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Exonuc_VII_L
EH
HTH_20
ARMT1-like_dom
Nro1
Motif
Other DBs
NCBI-ProteinID:
CBL19893
LinkDB
All DBs
Position
1559803..1560930
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AA seq
375 aa
AA seq
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MEMNMAKFSEKLVELLELAKKKKNVLEYQEISDFFKDSPLEVDQMEKVFDFLEASGVDVL
RITDNSGDELLLDNDMDMDGMEDEEEVELDKIDLSVPEGVSIEDPVRMYLKEIGKVSLLS
ADEEIELAKRMEKGDEAAKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVE
KFDYRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGRE
PTPEEIAEEMDMPVDRVREILKISQEPVSLETPIGEEEDSHLGDFIQDDNVPVPADAAAF
TLLKEQLVEVLSTLTDREQKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRK
LRHPSRSRKLKDYLD
NT seq
1128 nt
NT seq
+upstream
nt +downstream
nt
atggaaatgaatatggcaaaattcagcgagaaacttgtagagcttcttgaacttgcgaaa
aagaaaaagaatgtgctggaatatcaggagatcagcgacttcttcaaggactctccactg
gaagtagatcagatggagaaagtctttgacttcctggaggccagcggtgtggacgttctc
cgtatcacagacaacagcggtgacgaactcctccttgataacgatatggatatggatggg
atggaagatgaagaagaggtagagcttgataagatcgacctctctgtaccggaaggtgtc
agcatcgaggatccggtccgtatgtacctgaaagagatcggtaaagtcagtctgttaagt
gcagatgaggagatcgagcttgccaagagaatggaaaagggggatgaagctgccaagaaa
cgtctggcagaggccaatctccgtcttgttgtcagcattgcaaagcgttatgttggacgt
ggaatgctgttcctcgacctgatccaggagggaaatcttggccttatcaaagctgttgaa
aaatttgattacagaaaaggctacaagttcagtacctatgcaacctggtggatccgtcag
gctatcacaagagccattgcggatcaggcacgtaccatccgtatccctgtgcatatggtt
gagaccatcaacaagctgatccgtgtttcccgtcagctgctccaggagcttggacgtgaa
cctacgccggaggaaatcgctgaggagatggacatgccggtagaccgtgtacgtgagatc
cttaagatctcccaggagccggtatctctggaaactcctatcggtgaggaggaagatagt
catcttggcgatttcatccaggatgataatgttccggtacctgcagatgcagctgcattt
acacttctgaaggagcagctggtagaagtcttaagtacgcttactgaccgtgaacagaag
gttcttcgcctccgtttcggactggacgacggacgtgccagaactctggaggaagttggt
aaagagttcaatgtcacaagagagcgtatccgtcagatcgaggcaaaagctctgcgcaag
ctgcgtcatcccagccgcagccgcaagctgaaggattatcttgactga
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