Ruminococcus sp. SR1/5: CK1_18850
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Entry
CK1_18850 CDS
T02601
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
rum
Ruminococcus sp. SR1/5
Pathway
rum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CK1_18850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rum03019
]
CK1_18850
03016 Transfer RNA biogenesis [BR:
rum03016
]
CK1_18850
Enzymes [BR:
rum01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
CK1_18850
Messenger RNA biogenesis [BR:
rum03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CK1_18850
Transfer RNA biogenesis [BR:
rum03016
]
Prokaryotic type
tRNA degradation factors
CK1_18850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
KH-I_KHDC4-BBP
KH_KhpA-B
OB_RRP5_4th
SPATA25
Motif
Other DBs
NCBI-ProteinID:
CBL19935
LinkDB
All DBs
Position
1607961..1610054
Genome browser
AA seq
697 aa
AA seq
DB search
MYKSYSMELAGRTLTVDIGRVAKQANGAALMHYGDTTVLATATASKEPREGIDFFPLSVE
YEEKMYAVGKIPGGFNKREGKASEHAILTSRVIDRPMRPLFPKDYRNDVTLVDMVMSVDP
ECNPEIPAMLGSSIATCISDIPFDGPCATTQVGMIDGEFIINPTLAQKAVSDLQLTVAST
REKVIMIEAGANEIPEDKMIEAIYKAHEVNQEIIKFIDQIVAECGKEKHSYESCAVPQEL
FDEIKKIVPPEEMEVAVFSDDKQTRENNISEITDKLKEAFADNEEWLAVLGEAVYQYQKK
TVRKMILKDHKRPDGREIRQIRPLAAETDIIPRVHGSAMFTRGQTQICTVTTLAPLTEAQ
RLDGLDEFETSKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALVPVLPTEEEFP
YAIRTVSETFESNGSTSQASICASTMSLMAAGVPIRKPVAGISCGLVTGETDDDYIVLTD
IQGLEDFFGDMDFKVAGTHDGITAIQMDIKIHGLTRPIVEEAIRRTKEAREYILTEVMEK
CIDKPRTTVGEFAPKIIQIQIDPQKIGDVVGQRGKTINTIIERTGVKIDITDDGAVSICG
TDQKGMDEAKRMIEIITTEFEAGQIFTGRVVSIKEFGAFLEFAPGKEGMVHISKISKQRI
NRVEDVLTLGDKVKVICLGKDKMGRISFSMKDVPEEA
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atgtacaaaagttattccatggaacttgcaggaagaacactgactgtagatatcggacgt
gtagcgaaacaggccaatggtgctgctcttatgcactatggtgatactacagtccttgct
actgctaccgcatccaaagagccaagagaaggaatcgatttcttcccgttaagtgttgag
tatgaggagaagatgtatgcagtaggaaagatcccgggaggattcaacaagagagagggt
aaggcaagcgagcatgcaatccttacatcccgtgttatcgaccgtccgatgcgtccgctg
tttccaaaggattacagaaatgacgtaactctggtagatatggttatgtctgttgatccg
gaatgcaatccggagatcccggctatgcttggttcttccattgcaacctgtatttctgat
atcccatttgacggtccatgcgcaaccacacaggttggtatgatcgacggcgagtttatc
atcaacccgacacttgcacagaaggcagtttctgatcttcagcttacggttgcttctaca
agagagaaggttatcatgattgaggccggagctaatgagatcccggaagataagatgatc
gaggctatctacaaggctcatgaagtgaaccaggagatcatcaaattcattgaccagatc
gtagcagagtgcggaaaagagaaacattcctacgagtcctgtgcagtacctcaggagctt
tttgatgagatcaagaagatcgttcctccggaagagatggaggttgccgtattctctgat
gacaagcagacacgtgagaataacatcagcgagatcactgataagctgaaagaagctttt
gcagacaatgaggaatggcttgccgttctcggtgaggctgtatatcagtaccagaagaag
actgtccgcaagatgatcctcaaagatcataaacgtccggatggacgtgagatcagacag
atccgtccgctggctgcagagacagatatcatcccgagagttcatggttctgccatgttc
acaagaggacagactcagatctgtaccgttactacacttgctcctcttacagaggcacag
cgtcttgacggactggatgagtttgagacatccaagagatatatgcaccactacaacttc
ccgtcctactctgtaggtgagaccaagccttccagaggaccgggacgtcgtgagatcggt
cacggagcacttgctgagagagcactggtaccggtacttcctacagaggaagaattccca
tatgcaatccgtaccgtatctgagacatttgagtccaacggctccacatcccaggcaagt
atctgtgcatctaccatgtcactgatggctgccggtgtaccgatcagaaaaccggttgca
ggtatttcctgcggacttgttacaggtgaaacagacgatgattacatcgttcttacagat
atccagggccttgaggacttcttcggagatatggacttcaaggtagccggaacacatgac
ggaatcacagcgatccagatggatattaagatccatggtcttacaagaccgatcgttgag
gaagcgatccgcagaacaaaagaggcaagagaatatatcctgacagaagttatggagaaa
tgtatcgacaagcctcgtacaactgttggggagtttgctccgaagatcatccagatccag
atcgacccgcagaagatcggtgatgtagtcggacagagaggaaagactatcaacacgatc
atcgagcgtacaggtgtgaagatcgacatcacagacgacggcgcagtttctatttgcgga
acagaccagaagggtatggatgaagcaaaacgtatgatcgagatcatcactaccgagttt
gaggcaggacagatctttacaggacgcgtagtcagcatcaaagagtttggcgcattcctt
gagtttgcaccgggcaaggagggaatggtacacatttccaagatctccaaacagaggatc
aaccgtgttgaggatgttctcacacttggcgacaaagttaaggttatctgccttggcaag
gacaagatgggaagaatcagcttcagcatgaaggatgtaccggaagaagcataa
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