Ruminococcus sp. SR1/5: CK1_20540
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Entry
CK1_20540 CDS
T02601
Name
(GenBank) ATP-dependent DNA helicase, RecQ-like
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rum
Ruminococcus sp. SR1/5
Pathway
rum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CK1_20540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rum03019
]
CK1_20540
03400 DNA repair and recombination proteins [BR:
rum03400
]
CK1_20540
Enzymes [BR:
rum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CK1_20540
Messenger RNA biogenesis [BR:
rum03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CK1_20540
DNA repair and recombination proteins [BR:
rum03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CK1_20540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RQC
HRDC
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
CBL20075
LinkDB
All DBs
Position
complement(1756914..1758743)
Genome browser
AA seq
609 aa
AA seq
DB search
MTKQELLKTHFGYDTFREGQEAVIDALLAGKDVLAVMPTGAGKSICYQVPALMMKGITLV
ISPLISLMKDQVRSLNQVGISAAYLNSSLTQGQYFTALRYAKAGRYPIIYVAPERLTTEA
FLDFALSADISMIAVDESHCVSQWGQDFRPSYLKIAEFVAQLPKRPVIGAFTATATKEVR
EDIARLLGLQDPFCTTTGFDRENLYFAVKTPKDKYKEVHDYILEHPDDSGIIYCLTRKLV
EEVCGKLIRDGITATRYHAGLSDEERRNNQDDFIYDRCRVMVATNAFGMGIDKSDVRYVI
HYNMPKNMEGYYQEAGRAGRDGDPAECILLYSGKDVVTNQYLIERGQDNQEMEAAAWRLV
RERDQERLKQMTFYCFTHDCLREYILKYFGEYGKSYCGNCLNCQTEFEEQDVSREARAMI
RCVESSGQRYGVTVILDTLRGASTAKIRQYEMDGNPEYGVCAKIPAHRLRQIFNYLVLKE
YLHLTDDGYTIVKLTAASRSLLEEAHILTMKMSKELETKKKEKRSRLPKSAVGELGEQDE
PLFQKLRALRLEIAREEKIPPYMVFSDKTLIHMCILKPGNEEEMLNVTGVGRHKYEKYGK
RFIDAVKNL
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgacgaaacaggaacttttaaagacccatttcgggtatgatacattcagagaagggcag
gaagcggtgatcgatgcgcttcttgcaggaaaagatgttctggcagtgatgccaaccggc
gcaggaaaatccatctgctatcaggtaccggcactgatgatgaaggggatcacactggta
atatcaccgttgatctcccttatgaaggatcaggtgagaagcctgaaccaggtcggtatc
tcagcagcatacctcaacagctctctgacgcaggggcagtatttcacagccttgcgctat
gcaaaggcaggacgatatccgatcatctatgtagcaccggagaggcttaccacagaggcg
tttctggattttgcgctgagcgcggatatttccatgatcgcagtggatgagtcacactgt
gtatcacagtggggacaggattttcggccaagctatctgaagatcgcagagtttgtggca
cagcttccaaaaagaccggtgatcggtgcatttacagctacagctacgaaggaggtcagg
gaggatattgcaagacttctggggcttcaggatcccttttgcacaaccacaggatttgac
cgggaaaacctttattttgcagtgaaaacaccgaaagataaatataaggaagtacacgat
tacatactggagcatccggacgacagtggaatcatctactgtctcaccagaaagctggtg
gaggaggtctgcggaaagctgatccgtgacggcatcacggccaccagatatcatgcagga
ctttccgatgaggaacgccggaacaatcaggatgattttatttatgaccgctgtcgtgtg
atggtagccaccaatgcatttggaatgggaatcgacaagtccgatgtgcgttatgtcatt
cattataatatgccgaagaacatggaaggctattatcaggaagcaggccgtgcgggccgt
gacggcgatcctgcggaatgtatcctgctttacagcgggaaggatgtggttaccaatcag
tatcttatcgagagaggacaggataaccaggaaatggaagcggcagcctggcgccttgtc
cgggagcgtgatcaggagaggctgaagcagatgaccttttactgctttacccatgattgt
ctgcgtgagtacatcctgaaatattttggggaatacggaaaaagctactgcggaaactgc
ctgaactgccagaccgagtttgaagagcaggatgtgagccgggaggccagggcaatgatc
cggtgcgtggaaagcagtggtcagagatacggggtgaccgtgatcctggatactctgcgt
ggtgcatctacggcgaagatccggcagtatgagatggatggaaatccggaatatggagtc
tgtgcaaagattccggcacaccggctgcggcagatctttaattatctggtactgaaggaa
tatcttcatctgacggatgacggatatacgattgtgaagctgaccgccgcttccaggtca
cttctggaggaggcgcatatcctcacaatgaaaatgtcaaaagagctggagacgaagaaa
aaagagaaacggagcagacttccgaaatctgcagtcggggagctgggagaacaggatgag
cctctttttcagaagctccgtgctcttcgcctggagatcgccagagaggaaaaaatcccc
ccttatatggtcttttccgacaaaacccttatccatatgtgcattctgaagcccggaaac
gaggaggaaatgctgaatgtgacaggagtcggcaggcacaagtacgaaaaatacggaaaa
aggtttatagacgcggtgaaaaatctgtag
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