Ruminococcus sp. SR1/5: CK1_28420
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Entry
CK1_28420 CDS
T02601
Name
(GenBank) fibro-slime domain
KO
K21449
trimeric autotransporter adhesin
Organism
rum
Ruminococcus sp. SR1/5
Brite
KEGG Orthology (KO) [BR:
rum00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
rum02000
]
CK1_28420
Transporters [BR:
rum02000
]
Other transporters
Pores ion channels [TC:
1
]
CK1_28420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SpaA
SH3_3
VWA_2
VWA
Gram_pos_anchor
CarboxypepD_reg
SpaA_2
SH3_4
DUF5641
Motif
Other DBs
NCBI-ProteinID:
CBL20726
LinkDB
All DBs
Position
2483696..2489482
Genome browser
AA seq
1928 aa
AA seq
DB search
MKKLRNNKIRKLLAFMVALALMVSCMPSAYTISASEAFGDGTEDIFTDGEITSEPAAEES
TPDVSSADQEETEQAQQSTLTYENDSVKVTAEALEDGALPQNTALKADSVNENSSVSYDT
VSQKLSAAATDKGSSLRGFFAYDVYFADGDGNRVEPNGRVRVTFEYKTPAAPELTDAAST
SVTVEKLHYNSSTGDTDVNTLQANEDLKVLNVNEGKQIQTLQVETGNAAVFAVMWDSPET
ADVEAEAVSGNEDEVPIASEELTDGMDISDEPEQDAAETPAAENPEVTPEAEPSEEPAEN
PDAEPTEAPAEDPDVVEEPAEDIASPDEVTAADENGETSLIEVLGDDTNLRVSPSIEAEV
LATVNAGTQLTLLDTVTAEDGATWYKVSWEGTEAYIRSDMAQVVDSSDEAEEPEDVQEEE
IQPEITRYDYKSDEVNVKVTLTDPADLPDNAELSVTPVELSQEAEDQITEEAIKEKKAIE
KIHSYDIKFLVDGEEVQPGATVKVSVSLNDEKKIKDADVYHVDENDNVENMDGSVAKNGD
VEFETTHFSTYVIVGNKRDDKIKVTIEHYDATTEEKIYADDVDKELSVGQKFDCKKATNW
DIKEVKVVIDGKENTVAAGDIELAQDATVKVYYTPTTGTFAGAPTFYDYTVKAGESGSTY
YSINQKSNYSDPDSNQKLSMGETHNGKLADQNYTPYQYTWQKGNKTVNLWTGGKDVITDL
LKGLDENGNVEFNYPDPGFFNETDLLAGNSKDNYLRKVYKDYNLNFERSGDTYTLTGVTD
GSGTNVTTQYKLNKKENSGEDFFPLDTVASKYEKGYTRKTQSALGNDGKEHNYYFGMRYD
MEFNIGDYVGPLNYSFTGDDDMWVVMDGGKENQQIIIDLGGIHNAATKTVNLRDYLDEGD
KSTHTLTVLYMERGAGASNCYMNFTLPNVTISQVTTDALGTLNFQKVNKKGAGLSDARFT
LYNDEECTTQIATATSDDSGNVTFDKLRAGTYYLKEIQAPVGYVASNEKWTVTVTKENNN
VTTTLKNSSGTAVKDNKILNETPEEIINSSMVTSKTAKVKDWDQRTYDITINATSTSTSS
IIETKTSVADIMLVLDVSGSMGEDITSYSYTFVANNTSEARDDKKLLNRNVTYYIEVDGS
YKEMWYYSSYNKGWRVGPRGSSDDAAKDKYNNCKIYTRTSTTETRLDALKNAVNQFIDDT
AKKSPNSKIGITVFSSTDDYNRPYGNHGTSVSLGEVGTADSAKVTELKNFVKDLKANGGT
DPAVGLEDAKNKLDAMVDTNPKYVVLFTDGKPTGGGNKWNSNAQKNAETQAGELKTGLRN
NVDNAKNPYTVYTIGFALNDEGDRAKTFLSGGTYDGKKDPGIASSSDCAKTADDAASLTQ
IFQSISSTINKNVDITGATITDVIDSRFEIVDRGNVITETNFEGGKYTLENGGIVTKRND
GTYQVQWTDQTIKHTTDGTNGWSRTITVKAKDSFIGGNNIPTNVSPDSKISVGDLKKVLD
QPTVNVKVNLVVKDKEITIYKGDSVPMDEQIRNELFATSKPTSYKDGTVNETDSKKEDGT
SLIKLQWFKKDNGVRTNIDESEIKTALNDGTEYYLEVTYTAPTESTDTSKTNTDGHFVGT
ETAKNPGNNNLYGIYKINVISGQIQIIKNVTEASTEARTFKFNVEDSDGNAVSGSPLKVI
VEADQTSGVAKLENLPRGYYTVTEVEADGYTIQAFEVDGQTDCENSKSDTSKSLTFRLGY
DTDKNNVIKNYTYKQTDGGVKGVASYTNEAVTKLDLKKTDTENHLLTGSEFNLEIKNGDN
WKTIQNGIKVINGDSDIELTKLKSGIYRLTEIIAPKGYSILGSSICFKISLGKVELVNEN
GEAANSSEMWTLDETNKVLTIKNAKLYSLPESGGPGTYGFTISGVAILATALLLFIKNKR
REEEAKRS
NT seq
5787 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaattaaggaataataagatcagaaaactcctggcatttatggtggctttggcg
ttgatggtatcctgtatgccgagtgcatatacgatctccgcgagtgaggcgttcggagat
ggaacggaggatatatttacagatggcgaaattacatctgaaccagcggccgaagaatcg
acaccggatgtaagcagcgctgaccaggaggaaacggaacaggcgcagcaatcgacgctt
acatatgaaaatgattctgttaaagtaacagcagaggcactggaggacggagctcttccg
cagaatacagcattgaaggctgacagcgtaaacgagaattcatccgtatcttatgataca
gtttctcagaagctttcagcagcagctacagacaagggcagcagcctgagaggttttttt
gcgtatgatgtgtattttgctgatggcgacggaaacagagtcgagccgaacggcagagtc
agagtaacttttgagtacaagacaccggcagcaccggagcttaccgatgcagccagcacg
agtgtaaccgttgagaagcttcattataacagcagtaccggtgatactgatgttaacacc
ttacaggccaacgaggatctgaaggttctgaatgtcaacgagggcaaacagatccagaca
cttcaggttgagactggcaacgcagctgtttttgccgttatgtgggattctcctgagaca
gcagatgtcgaggcggaagctgtttccggtaatgaggacgaggtgcctatcgcatcagag
gagcttacggacggaatggatatttcggacgagcctgagcaggatgcagctgagacaccg
gcagcagagaatccggaggtaactcctgaggcagagccttctgaggagccagcggagaat
ccggatgctgaacctaccgaagcgccggcagaggatccggatgtggtggaagaaccggca
gaggatattgcgagcccggatgaggttacggcagcagatgagaatggtgagacaagcctg
atcgaggttctgggagacgatacgaatcttcgtgtcagcccatctatcgaggcagaggtt
ctggcaactgtaaacgcaggaacacagctcacacttctggataccgtaacagcagaggac
ggagcaacctggtacaaggtttcctgggaaggaaccgaggcttacataagaagtgatatg
gcacaggttgttgatagcagtgatgaggcagaagagcctgaggatgtgcaggaagaagaa
attcagcctgagatcaccagatatgattacaagagtgacgaggtcaatgtcaaggttact
cttaccgatccggcagaccttccggacaacgcagagctttccgtaacaccggtagagctc
agccaggaagccgaagaccagatcacagaagaagcgatcaaagaaaagaaagccatcgag
aagatccattcctacgatatcaaattcctggtggacggcgaagaagttcagccgggtgct
acagtgaaggtatctgtatctctgaatgatgagaagaaaatcaaggatgcagatgtatat
cacgtagacgagaatgataacgttgaaaatatggatggcagcgttgccaagaatggtgat
gttgagttcgagactacgcatttttcgacttatgtaatcgttggtaataagcgtgacgat
aagataaaagttacaatagagcattatgacgcaacaactgaagagaagatttatgcagat
gatgttgataaagaactttcagttgggcagaaatttgattgtaagaaggctacaaactgg
gatatcaaggaagtaaaagtagttatagatggaaaagagaatactgtagcggcaggtgat
attgaattagcacaggatgctacggttaaagtatattatactcctaccactggaacattc
gccggtgcacctacgttttatgattatacggtaaaggccggagagagtggaagtacttat
tattccattaatcagaagagtaattatagtgatccagacagtaatcagaagttaagtatg
ggtgaaacccataatggaaaattagcagatcaaaactatacgccatatcaatatacttgg
caaaagggtaacaaaacggttaacttatggactggaggcaaagatgttattactgatttg
ttgaagggactagatgaaaatggcaatgtagaatttaattatccagatccaggatttttt
aatgagactgatttactggcaggaaattcaaaagacaattacttaagaaaagtatataaa
gattataatttgaattttgaaagaagtggtgacacatatacattaacgggtgtaacagat
ggaagtggcactaacgtaacaacacagtataagttaaataaaaaggaaaattcgggagaa
gatttctttccattagatactgtggcttcaaagtatgagaaaggatatactagaaaaacg
caaagtgcacttgggaatgatggtaaagaacataattattattttggaatgcgttatgac
atggagttcaacattggtgattatgtaggtccattaaattattcttttaccggtgatgac
gatatgtgggttgtcatggatggaggaaaagaaaatcagcagattatcattgatttaggt
ggaattcataatgcggcaactaaaactgtgaacttgagggattatttggatgaaggagat
aaatctacacatacattaacggttctttatatggaacgaggagcaggtgcttctaactgt
tacatgaattttacccttccaaacgtaacaatttcacaggtaacaacggatgcgcttgga
actctgaatttccaaaaagttaataaaaaaggtgctggacttagcgatgcaagatttact
ctttataatgacgaagagtgcacaacacagattgcaacagctacatctgatgatagcgga
aatgttacatttgataagctgagagcaggaacatattatctgaaagagattcaggcgcca
gtgggatatgttgcttccaatgaaaaatggacggtaacggtaacaaaagaaaataataat
gttacaaccacattaaaaaacagttcaggaacagcagttaaagacaataaaattctgaat
gagactccggaagaaattatcaactccagtatggtgactagcaaaacggctaaagtgaaa
gactgggatcagagaacctacgacattaccattaacgcaacatccacaagtacaagttcc
ataattgaaacgaaaacgtctgtggcagatatcatgttggtattggatgtgtccggatcg
atgggagaggatattacttcttattcatacacatttgttgctaataatacttctgaagca
agagatgacaagaagcttctaaatcgtaatgtaacgtattatattgaggtggatggttct
tataaggagatgtggtattattcttcttataacaaaggatggcgtgtgggtccgaggggt
tcatcagatgatgcagcgaaagacaaatataataattgtaaaatatatacaagaactagc
acaacagaaacccggcttgatgcacttaagaatgctgtaaatcagtttatagatgataca
gcgaagaaatctccgaatagtaaaataggtattactgtatttagcagtactgacgactac
aatagaccatatggtaatcatggaacatctgtaagtctgggagaagtaggtactgcagat
agtgcaaaggtaacggaacttaagaatttcgttaaagatttgaaggcgaatggaggtacg
gatcctgcggtaggacttgaggatgcaaagaacaagttggatgctatggttgatacaaat
cctaagtatgtggttctgttcaccgatggtaagccgactggcggaggtaataagtggaat
agtaatgcacaaaaaaatgctgaaactcaggcaggcgaattaaaaacaggcctaagaaat
aatgtggataatgcaaaaaatccatatacagtatacaccataggctttgcacttaatgat
gaaggagatcgcgcgaagacgttcttgtctggtggtacgtatgatggtaaaaaggatcca
ggaattgcttcatcatcagattgcgcaaaaacagcagatgatgcagcatcgcttacacaa
attttccagagtatcagtagtacaattaataagaacgttgacattaccggtgcaacaatt
actgatgtgatcgacagtagatttgaaattgtagatagaggtaatgttatcaccgaaacc
aatttcgaaggtgggaaatatacattagagaatggtgggattgtaacaaagcgtaatgac
ggtacttatcaggtacagtggactgatcagaccattaaacacacgacagatggtacaaat
ggctggagtagaaccattactgtaaaagcaaaagatagtttcatcggtggtaacaatatt
cctaccaacgtctcccctgattctaagattagcgtaggagatttgaagaaagtattggat
cagcctacggttaatgtcaaagttaatctggtagttaaggataaagagattactatctac
aaaggtgattccgtaccaatggatgagcaaattcggaatgagttgtttgccactagtaaa
ccaacatcttacaaagatggtacagtaaacgaaacagattctaaaaaagaggatggtaca
tcattaattaaattacagtggtttaaaaaagacaacggtgttagaacaaacatcgatgag
tctgaaataaaaactgcacttaatgatggaactgagtattatctggaagtaacttatact
gctccaacagaatcaacggatacgagtaaaactaatacagacggacatttcgtgggaact
gagacagcgaaaaatcctggtaataacaatctatatggtatttataaaatcaatgttatc
agcggtcagattcagattataaagaatgtgacagaagcgtctacagaagccagaacgttt
aaatttaatgtagaggattcagatggaaatgctgtttctggtagtccgctgaaggtgata
gttgaagctgatcagactagtggagttgcaaaattagagaatcttccaagaggatattac
actgtaacggaagtagaagcagatggatatacaattcaagcatttgaggttgacgggcag
acagattgcgaaaactctaaatcagatacatccaaatcattgactttcagacttggttat
gacacggataaaaataatgtcattaagaattatacgtataaacaaactgatggtggtgtg
aagggtgttgcttcctacacaaacgaagcagtaacaaaactggatctgaagaagacagat
acagaaaatcatctattaacaggttctgaatttaatttggaaataaaaaatggtgataat
tggaaaactattcagaatggtataaaagtaatcaatggggattcagatattgaactgacc
aaattgaaatcgggtatttataggctgacagagattatcgctccgaagggatattcaata
ctgggtagcagtatttgtttcaaaatctcattaggaaaagtagaacttgttaatgaaaat
ggtgaggcagcaaatagtagtgagatgtggactttggatgaaacgaataaagttttaaca
atcaaaaatgctaaactttattccttaccagaatccggtggtccgggaacctatggattt
acaatcagtggtgtagcgattcttgcaactgcactcctgttgtttataaagaataaacga
agggaggaagaagcaaagagatcgtaa
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integrated database retrieval system
