Ruminococcus sp. SR1/5: CK1_28540
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Entry
CK1_28540 CDS
T02601
Name
(GenBank) hypothetical protein
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
rum
Ruminococcus sp. SR1/5
Pathway
rum03030
DNA replication
rum03430
Mismatch repair
rum03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CK1_28540
03430 Mismatch repair
CK1_28540
03440 Homologous recombination
CK1_28540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rum03032
]
CK1_28540
03400 DNA repair and recombination proteins [BR:
rum03400
]
CK1_28540
Enzymes [BR:
rum01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CK1_28540
DNA replication proteins [BR:
rum03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CK1_28540
DNA repair and recombination proteins [BR:
rum03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CK1_28540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
DNApol3-delta_C
AAA
nSTAND3
Mg_chelatase
ISPD_C
AAA_5
AcetDehyd-dimer
AAA_22
Motif
Other DBs
NCBI-ProteinID:
CBL20736
LinkDB
All DBs
Position
2501267..2502256
Genome browser
AA seq
329 aa
AA seq
DB search
MAGFHDIIGHDDIIRHLKNAIETGKVSHSYIFTGEPGSGKKLLAGTFAAALQCESGESEP
CMTCDSCKKVIGKNHPDIITVTHEKPGSISIDEVRDQVVRDVDIKPYCSPYKIYIIPDAE
MMTVQAQNAILKTIEEPPEYAVIMLLTSNIDSLLPTIRSRCVRLDLKVVDDSLVKEYLME
HLQVPDYQAEIDASYAQGSIGKAKEAATSQEFADMTANALKILKYANSMEVYELTEAIKT
LTADKNNINDYLDIFQFWFRDVLMFKATREIDNLVFKQEINFIREQASERSYENIEKILE
ALEKTKVRLRANVNLELALELLFLTIREK
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atggcaggatttcatgacatcatcggccatgacgatataatcaggcatttgaagaatgcg
atagagacagggaaggtatcccactcttatatttttacaggggaaccgggatccggcaag
aagcttcttgcggggacttttgcggcagcgctgcagtgtgaatcgggagagtctgaaccg
tgtatgacttgtgattcctgtaagaaggtgatcggcaagaatcatccggatatcattaca
gtaactcatgagaagcctggaagcatcagcattgacgaggtgcgtgaccaggttgtgcgt
gatgtggatatcaagccgtactgcagtccgtataagatctatatcattccggatgcggag
atgatgacggtgcaggcgcagaatgccattttgaaaactatcgaggaaccgccggaatat
gcggtgatcatgctgctgacaagcaatatcgacagtcttcttcctacgatccgttccaga
tgtgtgcgtctggatctgaaggtggtggatgacagtcttgtgaaggaatatctgatggag
catcttcaggtgccggattatcaggctgagatcgatgcgtcttatgcgcagggcagtatc
ggcaaggcgaaggaggctgcgacttctcaggagtttgcggatatgactgccaatgccctg
aagattttgaaatatgccaattccatggaggtttatgagctgacagaggcgatcaagact
ttgactgctgataagaataatatcaatgattatctggatattttccagttctggttccgc
gatgttctgatgtttaaggcaacaagggaaattgacaacctggtttttaaacaggagatt
aattttatcagagagcaggccagcgagcgttcttatgagaatatcgaaaaaatccttgag
gcattggagaagacgaaggtgcgtctccgtgccaatgttaatctcgaacttgccctggag
ctcctgttcctgacaattagggagaaatag
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