Runella rosea: DR864_11100
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Entry
DR864_11100 CDS
T05537
Name
(GenBank) ATP-dependent helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
run
Runella rosea
Pathway
run03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
run00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DR864_11100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
run03019
]
DR864_11100
Enzymes [BR:
run01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DR864_11100
Messenger RNA biogenesis [BR:
run03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DR864_11100
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
DUF5882
Flavi_DEAD
PhoH
P-loop_SecA
AAA_19
Motif
Other DBs
NCBI-ProteinID:
AXE18251
UniProt:
A0A344THY0
LinkDB
All DBs
Position
complement(2619414..2620748)
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AA seq
444 aa
AA seq
DB search
MNFEDFNLNRQLLNAIADAGYEVPSPIQEQAIPLVLEGHDVLGIAQTGTGKTAAYVLPLL
MRIKYAQGMHPRALILAPTRELVMQIGAALGELAKYTDLRHIAIYGGLGPKTQIEALQKG
VDIVVATPGRFLDLYLRGEIVVKQLTTLVMDEADKMMDMGFMPQINRILEVIPRKRQNLL
FSATFPAKVERLSENFLEGPIRVEVTPQATTAARVDQIIYEVPNFRTKINLLELLVQDAA
VFERGMVFVRSRENAENIYKFLKRKVVTEDEVRVIHANKGQNTRINAMEAFKEGKVRILI
ATDVAARGIDVTQVSHVVNFDVPLIYEDYVHRIGRTGRANQEGNAITFVTIADDYHIAKI
EKIIRMTIPRQPLPEALEVPETPFEEQQALLRELDEQRRKDDPTFKGAFHEKKNKKVVHS
KPKNANPQKRTASSAKNSFKRRKK
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atgaattttgaagattttaacctcaatcgccaactgctcaatgccattgccgatgcgggg
tatgaggtgccgtctcccattcaggaacaggctattccgcttgttttggaagggcatgat
gtgttgggaattgcgcagaccggaacgggaaagaccgccgcgtatgtattgccgctattg
atgcgtatcaagtacgcgcaggggatgcaccctcgggcacttattttggcaccaacgcgt
gaattggtgatgcagataggcgctgctctcggcgaattggcaaaatatactgacttgcgg
cacatcgccatttatggcggtttgggcccaaaaacccaaattgaagctctgcaaaaagga
gtcgatattgtggtggctacgccggggcgtttcttggatttgtacctgcgcggtgagatt
gtggtgaagcagttgaccacgctcgtgatggatgaagctgacaagatgatggacatgggt
ttcatgcctcaaatcaaccgaattttggaagtaattccccgaaaacgtcagaatctgctg
ttttcggctacgtttcctgcaaaagtagaacgactttcggagaactttctggaaggtccc
attcgtgtggaagtcacacctcaggccactacggccgcacgcgttgaccaaatcatttat
gaagtccccaattttagaacaaagattaacctgctcgaattattggtgcaggatgccgcc
gtttttgagcgtggtatggtttttgtgcgctctcgcgaaaatgccgaaaatatctataaa
ttcctgaaacggaaggtagtgaccgaagatgaagtacgggtcattcacgccaacaaaggc
caaaacacgcgtatcaatgcgatggaggcttttaaagaaggaaaagtgcggattttgatc
gccaccgatgtggccgcccggggcattgatgttacgcaggtgagtcacgtggtcaacttt
gatgtgccgctgatttacgaagattatgtacaccgcattgggcgtacgggtcgggccaat
caggaagggaatgccattacgtttgtgaccattgcagatgattatcacattgccaaaatt
gaaaaaatcatccgaatgaccattcctcgacagcctttgccagaagcgttggaagtgcca
gaaacgcctttcgaagagcagcaagccttgttgcgagagttggatgaacaacgacgcaag
gatgatccaacttttaagggggcatttcatgaaaagaaaaataaaaaagttgtacattcg
aagcctaaaaatgcgaatccgcaaaaaagaacagcctcgtcagcgaaaaattcttttaag
agacgaaaaaagtaa
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