Runella rosea: DR864_15225
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Entry
DR864_15225 CDS
T05537
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
run
Runella rosea
Pathway
run03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
run00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DR864_15225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
run03019
]
DR864_15225
03009 Ribosome biogenesis [BR:
run03009
]
DR864_15225
Enzymes [BR:
run01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DR864_15225
Messenger RNA biogenesis [BR:
run03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DR864_15225
Ribosome biogenesis [BR:
run03009
]
Prokaryotic type
rRNA helicases
DR864_15225
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
AAA_30
AAA_19
UTP25_NTPase-like
Motif
Other DBs
NCBI-ProteinID:
AXE19003
UniProt:
A0A344TK32
LinkDB
All DBs
Position
complement(3654437..3656149)
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AA seq
570 aa
AA seq
DB search
MEVLFDSLGLSEEILKAVTEMGFTKPSPIQAEAIPSLLEGRDVLGQAQTGTGKTAAFGIP
ALEKVDISDKRTQVLMLCPTRELAVQVTEELRRIAKYKKGLKLETVYGGDSIERQIRSLK
IGAQIVVGTPGRVMDLIERKALKLDFVNYVVLDEADEMLDMGFREDIDTILESVPDERQT
VLFSATMSKPIMGIAQKFQEDPVQIKITRKEVTNENIEQTYFEVKQRGKIEVTCRVLDAY
DLKQVIIFCNTKRKVDEVTEELSSKGYSVESLHGDLRQTQRNQVMAKFRSGAANILVATD
VAARGIDVSGIDAVINFDLPLDEEYYVHRIGRTGRAGLTGKALTLVAKDEKYRLRQIETY
TKVKIDKGVIPTFEDIVGVRKARFISQVEEAVSTGDLDLYEDMLGMLHHTTGFTTEQIVA
ALVKINMGVQKSEFADNDLAWDADRDRRPSERGFEKRGRFEDRGGRGEERGSGRFGDRGG
DRGGDRGPKRNEPGMVRLFVSVGRKDRVQPRDIVGAIAGEAGIPGRVIGSIDIFDAYSFV
DVPERDARKVVEAMSGNTIKGKMVNIEVAR
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atggaagtactttttgattcattaggcctttcggaagaaattctgaaagcagtaacagaa
atgggttttaccaaaccctcacccattcaggcagaagccatcccgtcccttttggaaggc
cgtgacgtattgggacaagcccaaacaggaacgggcaaaaccgccgctttcggtattcct
gcgcttgaaaaagtagatatctccgacaagcgtacccaagtattaatgttgtgtcctacc
cgtgagttggcggtgcaggtaaccgaagagttacgtcgtattgccaaatacaaaaaaggg
ttgaaactcgaaaccgtttacggtggtgattcgattgaacgtcagattcgttcgttgaaa
ataggtgcccagattgtggtcggaacgcccggtcgtgtcatggaccttattgagcgtaag
gcgcttaagctggactttgtaaattatgtagtattagacgaagccgacgaaatgctcgat
atgggctttcgcgaagatattgataccattctggaaagtgtacccgatgagcgccaaacg
gtgttgttttcggctaccatgtcgaagcccatcatgggcatcgctcaaaaattccaagaa
gatcccgtccagattaaaattacgcggaaggaagttaccaacgaaaacattgagcaaacg
tattttgaagtaaaacaacggggcaaaatcgaagtgacttgccgggtattggatgcctac
gatttaaagcaggttattattttctgtaacaccaaacgtaaagtagacgaagtaaccgaa
gaactttcttccaaaggatattcggtcgaaagtttgcacggcgatttgcgccaaacgcaa
cggaatcaggtaatggcgaagtttcgttcaggagccgccaatatcttggtagccaccgac
gtagccgctcgcggtatcgacgtgtcgggtattgacgccgttatcaactttgacttaccg
ctcgacgaagaatactacgtgcaccgtatcggtcgtactggccgtgctggcttaacgggt
aaagcgctgacgttagtagccaaagatgaaaaataccgtttgcgccagattgagacctac
actaaagtgaaaatcgacaaaggagttattccaacttttgaagacatcgtaggtgtacgc
aaagcccgttttatctcgcaagtagaagaggcggtttcgactggcgatttggatttgtac
gaagatatgttgggtatgttgcatcatactacgggcttcactacggagcagattgtggcc
gcattggttaaaatcaacatgggtgttcagaaaagcgaatttgccgataatgatttggca
tgggatgctgaccgtgaccgtcgcccatcagaaagaggatttgaaaaacgtggtcgtttt
gaagaccgtggcggaagaggcgaagagcgtggctcaggccgcttcggcgaccgtggcgga
gatagaggcggcgacagaggtccaaaacgcaacgaaccgggtatggttcgtctgtttgta
agcgtaggtcgcaaagaccgcgttcaaccacgcgacatcgttggcgccatcgctggcgag
gcgggtattcccggccgcgtgattggctcaattgatatttttgatgcgtactcgtttgtg
gatgttcccgagcgcgatgctcgtaaagtggtggaagccatgagcggcaataccatcaaa
ggtaaaatggtcaatatcgaagtagcacgataa
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