Runella rosea: DR864_15325
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Entry
DR864_15325 CDS
T05537
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
run
Runella rosea
Pathway
run03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
run00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DR864_15325 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
run03019
]
DR864_15325 (rnr)
03016 Transfer RNA biogenesis [BR:
run03016
]
DR864_15325 (rnr)
Enzymes [BR:
run01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
DR864_15325 (rnr)
Messenger RNA biogenesis [BR:
run03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DR864_15325 (rnr)
Transfer RNA biogenesis [BR:
run03016
]
Prokaryotic type
tRNA degradation factors
DR864_15325 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
DUF2196
Motif
Other DBs
NCBI-ProteinID:
AXE19023
UniProt:
A0A344TK52
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All DBs
Position
complement(3683016..3685382)
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AA seq
788 aa
AA seq
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MNKRKKTSEVKNKKTRSQKKIVTFLDEFKSEIAAFFEINNEQPFELQQLHDHFDADDHKM
QLILNGLLDELIEEGRIKRTPEGLYIANISANVLIGKVEHVNKNYAFIVMDSPLPEGSKL
SENADVWVDSDDLRGAIDGDTVRITLFSDYRSGRRREGRVEEVIARGKTEFVGEIELWPK
YGIVALDNRRMYEDVYIPENKLKGAQDGDKVLIRLTQYATRSRRMEGEVVEVLGKAGSHE
TEMHAILAEFGLPIRFTEELEAEANAIPDTISAEEIGRRRDMRDITTFTIDPADAKDFDD
ALSVRFLDNGNYEIGIHIADVTHYVRPGTALEQEAYARATSVYLVDRTVPMLPEKLSNNL
CSLRPNEDKLTFSVVVEMTPDAKIKHEWFGRTVIHSDKRFSYEEAQEILEMQAAADKAAT
EEGFVDLSAPLPYAKELTLLNTLAHKLRAERFAKGAVNFETVEVKFRLDEAGKPLGIYTK
VRKDAHKLIEEFMLLANRRVPEFIYQKSKDKGHPNTMVYRVHEEPDMEKLRIFAAFAGRL
GYKMKFENEKLAAQSLNQLMEDLEGKPEQNALEQLAIRTMAKARYGTEDAGHFGLAFKRY
SHFTSPIRRYPDMMAHRLLQHYLDGKPSPDRAELEPGCKHSSAREQLAANAERASIKYKQ
VEFMASMEPDRVWNGIITGVTEFGIFVEITDTASEGLVRMNDLNDDYYELDKENYRLVGQ
RTKKFYTFGDAVKVKVKETNISRRSMDLVLADANPTRSTSSFKNTTERSRQRSAGSSPKD
KGARRKRR
NT seq
2367 nt
NT seq
+upstream
nt +downstream
nt
atgaataaaagaaaaaaaacaagcgaggtaaaaaacaaaaaaactcgctcccaaaaaaag
attgttacttttttggatgaattcaaatcagagattgccgctttttttgaaatcaacaac
gaacagccatttgaactgcaacagcttcacgaccattttgacgccgatgaccataaaatg
cagttgattctgaatgggttactcgatgaacttattgaagaaggacgcatcaaacgtacg
ccagaaggtttgtatattgccaacataagtgccaatgtgctgattggaaaagtagaacat
gtcaacaaaaactacgcgtttattgtcatggattcgccgttgcccgaaggctccaaactt
tcggaaaatgccgacgtgtgggttgactccgatgatttgcgcggagccattgatggcgat
acagtgcgcattacgctgtttagtgattaccgcagcggtcgccgccgtgaagggcgcgta
gaggaggtcattgcacgtggaaaaaccgaatttgtgggtgaaatcgaactgtggccgaag
tacggcattgtggctttggacaatcgccggatgtatgaagatgtgtacatccctgaaaat
aaactcaaaggtgcgcaggatggtgataaagtactcattcgcctgacccaatacgcgaca
cgctcgcgccgcatggaaggcgaggtagtggaagtgctcggaaaagctggctcgcacgaa
accgaaatgcacgccattttggcggaatttggcttgccgattcgcttcaccgaagagctc
gaagctgaagccaacgccattcccgataccatttctgccgaagaaataggacgtcgccgc
gacatgcgcgatataacgaccttcaccattgaccctgccgacgccaaagactttgacgat
gcgctttcggtgcgttttttagacaacggaaactacgaaatcggcatccacattgccgac
gtgacgcattatgtgcgccctggaacggccttggaacaggaggcctacgcccgcgccacg
tcggtctatctcgtggatagaaccgtgccgatgttacccgaaaaactttccaataatctt
tgctccctgcggcccaacgaagataaactcacgttttcggtggtggtcgaaatgacgccc
gacgctaaaatcaaacacgagtggtttgggcgtacggtgattcactccgacaaacgattc
tcgtacgaagaagcgcaggaaatcttagaaatgcaggccgccgccgataaagccgccaca
gaagagggattcgttgacctttctgcgccgttgccgtatgccaaggaattgacgctattg
aatacactggcgcataaactccgggcggagcgatttgccaaaggagcggttaattttgaa
actgtcgaagtgaaatttcgattggatgaagcaggaaaaccgcttggaatttataccaaa
gtgcgcaaagatgcgcacaaactcatcgaagagtttatgcttttggccaatcgacgggta
ccggaattcatttatcaaaaatcaaaagacaaaggccatccaaacaccatggtgtatcgg
gttcacgaagagcctgatatggaaaaactgcgcatatttgccgctttcgcggggcgtttg
gggtataaaatgaaatttgagaatgagaaacttgccgcccagtcgctgaaccagttgatg
gaagacctcgaaggtaagcccgaacaaaacgcgctcgaacagttagcgattcggaccatg
gccaaggcccgttatggcaccgaagacgcaggccactttgggctggcgtttaaacgatat
tcgcactttacgtcgcccatccgacgctatcccgatatgatggcgcaccgtttattgcaa
cattatctggatggaaagccctcacccgaccgcgccgaacttgagcctggctgcaagcat
tcctcggcgcgggagcaattggctgccaacgcagagcgcgccagtatcaaatacaaacaa
gtggagtttatggcttcgatggagccagaccgtgtttggaatggtatcattacgggcgtg
acggaattcggcatttttgtggaaatcaccgacaccgcgtctgaaggattagtgaggatg
aatgaccttaacgacgattattacgaactcgataaagaaaactatcgcttggtagggcag
cgcaccaaaaaattctacacctttggtgatgccgtaaaagtaaaggttaaagaaaccaat
atttcgcgcagaagcatggatttagtgttggccgatgccaatccaacgcgcagtacttcg
tcgtttaaaaataccactgaacggagtcgtcaacgcagcgctgggtcatcgcccaaagat
aaaggcgcccgccgaaaacgcagataa
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