Runella sp. SP2: DTQ70_03195
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Entry
DTQ70_03195 CDS
T05690
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
rup
Runella sp. SP2
Brite
KEGG Orthology (KO) [BR:
rup00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rup03016
]
DTQ70_03195
Enzymes [BR:
rup01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
DTQ70_03195
Transfer RNA biogenesis [BR:
rup03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
DTQ70_03195
Prokaryotic type
tRNA splicing ligases
DTQ70_03195
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AYQ36163
LinkDB
All DBs
Position
complement(800962..802488)
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AA seq
508 aa
AA seq
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MNSLFTIEEILVLADIPASLHTTFLRVANGLHQHADYPKEKVLALFARMLENPKKFAYSK
NKVTNLAKAIYDLQKEKVFIPLSETGKSFFPPPEPAFVLNTSEKQEVTAFDLREEPLPYA
IFGREHIEQGALDQMKTAASLPISIAGALMPDAHQGYGLPIGGVLATHPETVIPYAVGVD
IACRMCMSIFDLPADFFKREPHLLKRTLVENTKFGIGGETGKKFDESVMDLPEWRATKII
RDLKDKAYRQLGTSGTGNHFVEWGVVEVFEQDDLLGLPVGNYLALLSHSGSRGFGGTVAG
YYSKLAMQKTRLPKSAAHLAWLDLNTEEGQEYWIAMNLAGEYASANHHEIHAKIARELRE
KPLKMVENHHNFAWKETLSNGEEVMVHRKGATPAGPNDLGIIPGSMTQPGFVVRGKGHDT
ALNSASHGAGRVMSRTKAFENITRHQLNKILEETNIQLIGGDLDEAPMVYKNIETVIAAQ
QDLVKVLAKFSPKIVRMADANRKEGRED
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atgaacagtttattcaccatcgaagaaatcttagtgctggccgatattccagcctcactg
catactacgtttttgcgagttgccaacgggctccaccaacacgccgactatcccaaagaa
aaggtacttgcactttttgctcggatgttggaaaaccctaaaaagtttgcctactccaaa
aacaaagtaaccaatttagccaaggctatttacgatttacaaaaagagaaagtgtttatt
ccgctttcggaaacagggaagtcgttttttccaccacctgagcctgcgtttgtattaaat
acttctgaaaaacaagaagttacagcgttcgacttgcgtgaagaaccgttgccttacgcc
atttttggacgagagcatatcgagcaaggagcattagaccaaatgaaaacggcggcaagc
ctgcctatttctatcgcgggggcgctcatgcctgatgcccaccaaggctacggcttgcca
attggcggtgttttggctactcatccagaaacggtcattccgtacgcggttggggtggac
attgcttgccgaatgtgcatgtcgattttcgacttacctgccgatttttttaaacgagaa
cctcatttgttaaaacgaacattggtcgaaaataccaaattcggaatcggtggagagaca
ggtaaaaagtttgacgaaagtgtgatggatttgcccgaatggagagcgaccaaaattatc
cgcgacttaaaagacaaagcctaccgtcagttgggtacgtcgggtacgggtaatcacttt
gtcgagtggggcgttgtggaagtctttgaacaagacgacctcctcggcctccccgttggc
aactatttggctttgttgtcgcactcaggttcgcgaggtttcggaggaacggttgcaggc
tactattctaaacttgccatgcaaaaaacacgtttgcccaaatcagcagcgcatttggca
tggctcgacttaaacaccgaagaaggacaagagtactggattgcgatgaatttggcgggc
gaatatgcttcggccaatcaccacgaaattcacgcaaaaatcgcccgtgaattgcgcgaa
aagcccctaaaaatggtcgaaaatcaccataattttgcttggaaagaaaccctttccaac
ggcgaagaggtgatggttcaccgaaaaggagccacgcccgcaggtcctaacgacctcgga
atcattccaggttcgatgacgcagccaggatttgttgtacgaggaaaagggcacgacacg
gcactcaactcggcctctcacggagcggggcgagtcatgtcacgaaccaaagcgtttgag
aacattactcgtcatcaactcaataagattttagaagagaccaatatccaattgattggc
ggggacttagacgaagcaccgatggtttataaaaacatcgaaacggtgattgcagcccaa
caagacttggtgaaggttttggctaaattcagtcccaaaatcgtccgaatggccgatgcc
aaccgaaaagaaggtcgagaagattaa
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