Runella sp. SP2: DTQ70_09555
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Entry
DTQ70_09555 CDS
T05690
Name
(GenBank) ATP-dependent helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rup
Runella sp. SP2
Pathway
rup03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rup00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DTQ70_09555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rup03019
]
DTQ70_09555
Enzymes [BR:
rup01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DTQ70_09555
Messenger RNA biogenesis [BR:
rup03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DTQ70_09555
SSDB
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Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
MMR_HSR1_Xtn
ERCC3_RAD25_C
AAA_22
Amidase
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
AYQ36247
LinkDB
All DBs
Position
complement(2263539..2264864)
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AA seq
441 aa
AA seq
DB search
MTFDSLQLIDPIRRALTAEGYETPTPIQAEAIPIVLSGKDLLGCAQTGTGKTAAFAIPIL
QLLSERQLHRNAKQRAIKALILTPTRELAIQIGESLASYGRYTGLKHTVIFGGVKQARQT
DALHNGVDILVATPGRLLDLMAQRFVSLKYLEIFVLDEADRMLDMGFIHDVRKVIAVLPP
RRQSLFFSATMPPEIVKLADTILHEPEKVEVTPVSSTVDLIQQWVYFVDKENKANLLIHL
LEEKKIENALVFTRTKFGADKVMKVLMRHNIKAESIHGNKSQNARQNALNNFKAKTTRVL
VATDIAARGIDVDELAHVFNYEIPNIPETYVHRIGRTGRAGASGTAYSFCETEERKSLKD
IQKLIDKVIPVVEEHPYPQSQKPGNEVAKPKPQSATPKSNNFQRARPKPSGNAPEQGGAA
KAKSGQRPWYAKRNEGKKGPR
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atgacatttgactcacttcaattaattgaccctattcgccgcgcactaacggccgaggga
tacgaaactccaaccccgattcaggccgaagccattccgattgttttaagcggaaaagat
ttgctcggatgtgcccaaacgggaacggggaaaaccgccgcttttgccattccaattctt
caacttttgtcggagcggcaattgcatcgaaatgccaaacaacgcgccatcaaagcgctc
attctgacgccaacccgcgagttagcgattcaaatcggggaaagtttggcctcttatggc
cgttatacgggtttgaaacataccgttatttttggcggggtaaaacaagctcgtcagacg
gatgcccttcacaacggtgtggacattctggtggcaacgcctgggcgcttgctggactta
atggctcaacgttttgtaagccttaaatacctcgaaatctttgtgttggatgaagccgac
cgaatgctcgacatgggctttattcatgacgttcggaaggtaattgccgtgctgcctccg
cgccgtcaatcactgtttttctcggccacgatgccacccgagattgtcaaattggccgat
actattttgcatgaacccgaaaaagtagaagtgacgcccgtatcgtcaacggtcgatttg
attcaacagtgggtgtattttgtggataaagaaaacaaagccaatttgttgattcatttg
ttggaagaaaagaaaatagaaaacgcattggtgtttacgcgtaccaaatttggcgccgat
aaagtgatgaaagtgttgatgcgacataacatcaaagctgaatcaatccacggaaataaa
tcacaaaacgctcgccaaaatgcgttgaataactttaaagcaaaaactacccgtgttttg
gtagcgacggacattgccgcgcgtggtatcgacgtggacgaattggcgcacgtttttaac
tacgaaataccgaatatccccgaaacctacgttcaccgaattggacgaacaggacgggcg
ggcgcttcgggaacggcttactcattttgcgaaacggaagaacgtaaatcgttgaaagat
attcagaaattgattgataaggtgattcctgtggtcgaagaacacccgtatcctcaaagt
cagaagcctggaaatgaggttgctaagcctaagccacagtcagcaacgccaaaatcaaac
aatttccaaagggctagacccaagccgtcgggcaatgcccccgaacaaggcggagccgcc
aaagcaaagagtggacaacgtccttggtatgccaaacgtaacgagggtaaaaaaggtcct
cgatag
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