Runella sp. SP2: DTQ70_14865
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Entry
DTQ70_14865 CDS
T05690
Name
(GenBank) ATP-dependent helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rup
Runella sp. SP2
Pathway
rup03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rup00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DTQ70_14865
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rup03019
]
DTQ70_14865
Enzymes [BR:
rup01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DTQ70_14865
Messenger RNA biogenesis [BR:
rup03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DTQ70_14865
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
Helicase_C_2
Flavi_DEAD
RUFY4
Z1
Motif
Other DBs
NCBI-ProteinID:
AYQ36336
LinkDB
All DBs
Position
complement(3738502..3739698)
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AA seq
398 aa
AA seq
DB search
MGFDEPTPIQAQAIPVILDNKDLIACAQTGTGKTAAYLLPILNKIIIAPDEIRHLNTLVL
APTRELAIQIDQQIEGLGYFTGVSSIAIYGGGDGAAWSQQRRALADGGNVIIATPGRLIA
LLQMGEINFKHLQHLILDEADRMLDMGFYDDIIKIISYLPSQRQTLLFSATMPPKIRTLA
KTILRNPEQISIAVAKPAEGILQQIYLAYDAQKIPLLKHILKEGSYESIIIFASTKENVK
KLNEELRKAKVKAKAFHSDLEQKEREEILREFKSRALPILIGTDILSRGIDVEGIDLVVN
FDAPHDPEDYIHRIGRTARAATTGTAVTFINEKDQRKLGAIERLIGKELPKVVLPASLGD
GPEYKPAASNKKPKNNKRPFRRGGPPKGSKGPKPAPQG
NT seq
1197 nt
NT seq
+upstream
nt +downstream
nt
atgggttttgacgaacctacccccatccaagcccaagcaattcccgttattcttgacaat
aaagacctcattgcctgcgctcaaacgggaacgggtaagacagcggcttatttgctgcca
attctgaataaaattatcattgcccccgacgaaattcggcacctcaatacccttgtttta
gcgccaacccgcgagttagccatccaaattgaccaacaaatcgaaggcttgggctatttt
acgggcgtaagctccattgccatttatggcggtggtgatggcgcggcatggagccaacaa
cgccgcgctttggccgacggtggcaatgtaatcattgctacgccagggcgtttgattgcg
cttttacaaatgggcgaaatcaactttaaacacctgcaacacttgattttggacgaagcc
gaccgtatgctagacatgggtttctatgatgacatcatcaagattatcagctatttgccc
tcacaacgccaaacgcttttgttttcggcaaccatgccgccaaaaataagaacgctggcc
aagacgattttgcggaatccagagcaaatcagcattgccgttgccaaacctgccgaggga
attttgcaacaaatctatttggcctatgacgcccaaaaaataccgttgctaaaacatatt
ttgaaggagggcagctacgaaagcatcatcatttttgcttccacgaaggaaaacgtaaaa
aaacttaacgaagagctccgaaaagccaaagtaaaggccaaagcgtttcactccgatctt
gagcaaaaagaacgagaagagattttgcgagagtttaaaagcagggctttgcctattcta
attggaacggatattttgtcacgtgggattgacgtagaagggattgatttggtggtaaac
tttgacgctccccacgaccccgaagattacattcaccgaatcggacgcaccgcccgcgcg
gccacgacgggcacggccgtgacgtttatcaacgaaaaagaccaaagaaaactcggggcc
attgagcggcttattggcaaagaactgccaaaggtagtgctgccagcgagccttggcgac
gggccagagtataagcctgcggcgtccaacaaaaagcctaaaaataacaaacgcccattc
cgaagaggcggccctcccaaaggctcaaaaggcccaaagcctgcaccgcaagggtag
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