Runella sp. SP2: DTQ70_20055
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Entry
DTQ70_20055 CDS
T05690
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
rup
Runella sp. SP2
Pathway
rup02020
Two-component system
rup02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
rup00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
DTQ70_20055 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
DTQ70_20055 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rup03021
]
DTQ70_20055 (rpoN)
Transcription machinery [BR:
rup03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
DTQ70_20055 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_3
HTH_31
LexA_DNA_bind
Motif
Other DBs
NCBI-ProteinID:
AYQ34309
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All DBs
Position
complement(4984661..4986088)
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AA seq
475 aa
AA seq
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MLNLVQTQKQSLKISPAQIQLLNFLQLNTLELEQHIKNELEENPFLDEGNEESSDDDWDN
AAEGGVSDRGDDRTQDYMDWDEFRDDDVPDYKTRINNYSDDDTTYTPAVVENVSWRQELK
EQFHLLLLTERQQILADFLVDSLTDEGYLTYTAEALADDVSFTSGIYVEVSEMVELIELL
RHMEPAGLGAKNLQDCLLLQLERRQEPEAALAKELVKKHFEDLAGRSYEKLMKGLGISAN
QLKDVLAFVGTLNPQPVSTSNQAEVLGVKDNVIPDYIVTVDGDLIDVELNNRRIPPLKIN
KSYTHDLGKSRAANTYVNSKINAANWLIDAIQQRQNTMLKSMRTIVKLQEDYFRTGDVRM
LKPMVLRDVAERIQMDVSTISRVTSGKYAQTPFGVIHLKDLFTEGVKTDSGEEVSNRQIQ
LALAELVAQEDKQSPLNDFQLAELLAEKGYPVARRTVAKYREQLDIPTATLRRTL
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atgttaaatttagttcagacacaaaaacaatcgctcaaaatatccccagcgcagatacag
ctgctcaattttttgcaactcaatacccttgagttggagcaacatatcaaaaacgagctg
gaggaaaatccttttttggacgaaggaaacgaagaatcatcggacgacgactgggataat
gccgccgaaggtggtgtcagtgaccgtggcgatgaccgtacgcaagattacatggattgg
gatgagtttagagacgacgatgtgcctgattacaaaacacgtatcaataattattctgac
gacgatacgacttacacccctgctgtagttgaaaatgtttcttggcgacaagagttgaag
gaacagtttcacttgctcttgctgacggagcggcaacagattttagccgattttttggta
gattctctgaccgatgaagggtacctgacttataccgctgaggcgctggcagatgatgtc
tcgtttacgagtgggatttacgtagaagtcagtgaaatggtggagttgattgaactgcta
cgccacatggaaccagcgggtttaggtgccaaaaacctgcaagattgccttttgttgcag
ttggagcgacgtcaggaacccgaagctgcgttggccaaagaactggtcaaaaaacatttt
gaggatttggcggggcgtagttacgaaaagctcatgaaagggcttggaatcagtgctaac
caactcaaagatgtattggcgtttgtcggaacactcaaccctcagcctgttagtacaagc
aaccaagcggaagtgttgggcgtaaaagacaatgtgattcccgattatatcgtcacggtt
gatggtgatttgatagacgtagaactgaacaatcgacgtatcccaccgctgaaaatcaac
aaatcatatacccatgacttggggaaatcacgagcggccaatacctacgttaattccaaa
attaatgccgctaactggctcatcgacgccattcagcagcgtcagaatacgatgttgaag
tcgatgcgtacgatcgtgaaattgcaggaagactatttccgaacgggcgatgtacggatg
ctcaaaccgatggtacttcgcgacgtagccgaacgcattcagatggatgtttcgacgatt
tcgagggtgaccagcggtaaatacgcccaaacgccttttggcgtcattcacctcaaagat
ttgtttacggaaggtgttaaaactgactcgggtgaagaagtgtcgaatcggcagattcag
ctggctttggcggagttggtggcgcaggaagacaaacaaagcccactgaacgattttcaa
ttggccgaattgttggccgaaaaagggtatcccgtcgcccgccgaaccgtggcaaaatac
cgcgaacaacttgatattccgacggctactttgcgccgaactttgtag
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