Runella sp. SP2: DTQ70_23795
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Entry
DTQ70_23795 CDS
T05690
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rup
Runella sp. SP2
Pathway
rup03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rup00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DTQ70_23795 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rup03021
]
DTQ70_23795 (rpoC)
03400 DNA repair and recombination proteins [BR:
rup03400
]
DTQ70_23795 (rpoC)
Enzymes [BR:
rup01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DTQ70_23795 (rpoC)
Transcription machinery [BR:
rup03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DTQ70_23795 (rpoC)
DNA repair and recombination proteins [BR:
rup03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DTQ70_23795 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AYQ34996
UniProt:
A0A3G3GU91
LinkDB
All DBs
Position
5907956..5912287
Genome browser
AA seq
1443 aa
AA seq
DB search
MSFKKNKKINSDFSRITISLASPESILESSYGEVTQPETINYRTYKPEMGGLFCERIFGP
VKDWECHCGKYKRIRYKGIICDRCGVEVTEKKVRRERMGHIELVVPVAHIWYFRSLPNKI
GYLLGLSTKKLDQIIYYERYVVVQPGVKAEDGVNKMDFLTEDEYLDIMDRLPRENQLLPD
TDPNKFIAKMGAEGLELLLSRTQLDELSYELRHNAANDTSQQRKAEALKRLKVVEALRDA
NTRIENRPEWMVIRMVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIEIK
APEVILRNEKRMLQEAVDSLFDNSRKVNAVRSEGNRALKSLSDMLKGKQGRFRQNLLGKR
VDYSGRSVIVVGPELKLHECGLPKDMAAELFKPFIIRKLIERGIVKTVKSAKKIVDRKDP
VVWDILENVLKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNADFDGDQM
AVHVPLGQEAILEASLLMLSSHNILNPANGAPITVPSQDMVLGLYYVTKGRKSTPEVPIA
GEGMTFYGAEEVIIALNEGKVSKHAHIKCRVTVRNEDGTLEKKLIETVAGRLLFNQCVPE
SVGYINELLTKKKLQQIIGHVFKIAGNARCAQFLDDIKQLGFQTAFKGGLSIGLGDIKIP
DVKWQLIEGAKEEVQGVMDNFMMGLITENERYNQIIDVWTRTNTKLANTLLTQLENDQQG
FNSVYMMMHSGARGSREQVRQLGGMRGLMAKPQKNLAGGVGEIIENPILSNFKEGLDVLE
YFISTHGARKGLADTALKTADAGYLTRRLHDVAQDVVVNEVDCGTLRGIEISALKDNEDI
VEPLSERILGRVSVHDVLDPLSGELILSSGQEITEEIAARIDETSIETVEIRSVLTCETR
SGVCSKCYGRNLASGRMAEIGESVGVIASQSIGEPGTQLTLRTFHVGGTAQNIAVEANIR
AKFEGKIEFEDMRTVESTDAEGNPVTIVMGRSGEIRIVSESNGQVLIGNNVPYGATLLVK
EGERVTKGHELCNWDPYNAVILSEFNGSAQYESIEEGITFREEIDEQSGFQEMVIIETRD
RTKNPGILVKGKSPLLTDADEKIYNLPVGARLVIKDGANVKAGQPLAKLPRTLGKTRDIT
GGLPRVTELFEARNPSNPAVVSEIDGVVIYGIVKRGNREINIESKDGTRKKYLVPLSKHI
LVQDGDYVKAGEPLSDGAITPSDILSIKGPTAVQEYLVNEIQEVYRLQGVKINDKHIECI
VRQMMQKVEIMEAGDTNFLEMQPVDKWTFREENDRVLDMKVVEDSGDSENVKPGMLISAR
RLRDENSTLKRRDQRLVVARDAKAAVAQPTLMGITQASLGTESFISAASFQETTKVLSEA
AVRGKRDTLDGLKENVIVGHLIPAGTGVRRYQKNIIGSKEELETVTESRERSSSRRSKRE
LAN
NT seq
4332 nt
NT seq
+upstream
nt +downstream
nt
atgtcattcaagaaaaacaagaaaatcaatagtgacttttcgcggattaccatcagtttg
gcttcgccagagtctattctggaaagctcatacggtgaagtaacgcaacccgaaaccatc
aactatcggacctataagcctgagatgggtggacttttctgtgagcgtatcttcggcccc
gtaaaagactgggaatgccactgtggtaaatataagcgtattcgttataagggcattatc
tgtgaccgttgtggggtggaagtaacggagaaaaaagtacgtcgtgaacgtatgggacac
atcgaattggtggtgcctgttgctcacatttggtacttccgtagcttacctaacaaaatt
ggttatttgttaggcttgtcaaccaagaaattggaccaaatcatctactacgaacgttac
gtagtagttcaaccaggtgtgaaagcagaagatggagtcaacaaaatggacttcttgact
gaagatgaatacttggatattatggatcgtcttccacgtgagaatcaacttcttccagat
acagacccgaacaaattcatcgctaagatgggggctgaaggactagagttgttgttgtca
cgtacgcaattagacgaattgtcttacgaattgcgccacaatgccgcaaacgatacttcg
caacagcgtaaagcagaagcgttgaaacgtttgaaagtcgttgaagcacttcgcgacgca
aacacccgcatcgaaaaccgcccagaatggatggtgattcggatggtgccagtgattcca
ccagaacttcgtccgcttgtgcctttggatggtggacgttttgctacgtctgaccttaac
gacctctaccgtcgtgtaatcattcgtaataaccgtttgaagcggctgattgaaatcaaa
gcgccagaagtaatcttgcgtaacgaaaaacggatgttgcaagaagcggttgactcgcta
ttcgacaacagccgtaaagtaaatgcggtacgttcggaaggtaaccgtgccttgaaatca
ctttcagatatgttgaaaggaaagcaagggcgtttccgtcagaacttgcttggtaagcgg
gttgactactcaggtcgttcggtaattgtggtaggtccagagctcaaattgcatgagtgt
ggtcttcccaaagacatggcggcagagttgtttaaaccgttcatcattcgtaagttgatt
gagcgtggtatcgttaaaacggtaaaatcggcaaagaaaatcgttgaccgcaaagacccc
gttgtttgggacatcttggaaaacgtattgaaaggccaccctgtattgcttaaccgtgct
cctacccttcaccgtttgggtatccaagccttccaacctaagttgattgaaggaaaagcg
attcagttgcacccattggtatgtacggccttcaacgccgactttgacggtgaccagatg
gcggtacacgtaccactaggtcaagaggctattttggaagcatcgttgttgatgttgtcg
tcgcacaacatcttgaaccctgctaacggagcgccaattaccgtaccttcacaagacatg
gtattgggtctttattacgtaacaaaaggacgtaaatcgaccccagaagtgcctatcgct
ggagaaggaatgacattctacggtgctgaagaagtaatcatcgccctcaacgaaggaaaa
gtgtctaaacatgcgcacatcaagtgccgtgtgactgttcgtaacgaggatggtaccctt
gagaaaaaattgattgaaacggttgcaggacgtctattgttcaaccagtgcgttcctgaa
tccgtaggatatatcaatgaattgttgacgaaaaagaaacttcaacaaatcattggacac
gtcttcaagattgcgggtaatgcacgttgtgcacaattcttggacgacatcaagcaactt
ggtttccaaacagccttcaaaggtggtttgtcaatcggtttgggagatattaaaatccca
gatgtgaaatggcagctcatcgaaggtgcaaaagaagaagttcaaggtgtgatggataac
ttcatgatgggtcttatcaccgaaaacgagcgttataaccaaattatcgacgtttggaca
cgtaccaacacgaaattggccaatacgcttttgacccaattggagaacgaccaacaaggc
tttaactccgtgtatatgatgatgcactcgggagcccgtggttctcgcgagcaggtacgt
cagttgggaggtatgcgtggtttgatggcgaaacctcagaaaaaccttgctgggggcgtt
ggagaaatcatcgaaaacccaatcctttcaaactttaaggaaggtcttgacgttcttgag
tactttatctctacccacggtgcgcgtaaaggtttggccgatacggccttgaaaacagcc
gatgcgggttacttgacacgtcgtttgcacgacgtagctcaggacgtggttgtgaacgag
gttgactgtggtacattgcgcggtatcgagatttcggcattgaaagacaacgaggacatc
gttgagccattgtctgaacgtatcttgggacgggtttctgtacacgatgtacttgaccca
ctttcgggtgagttaattttgtcatcaggtcaggaaatcaccgaagaaatcgcggctcgt
atcgacgaaacgagcatcgaaaccgtagaaatccgctcagtattgacttgcgaaacccgc
agtggggtttgttcaaaatgctacggacgtaacttggcgtcggggcgcatggccgaaatc
ggtgagtcggtgggggttattgcctcacagtcaatcggtgagccaggtacgcagctgaca
cttcgtacgttccacgttgggggtactgcgcaaaacatcgccgtagaagccaacatcaga
gcgaaatttgaaggtaagattgagtttgaagatatgcgtaccgtagagtcaacggatgcg
gaaggaaatccagtaacgattgtaatgggtcgttcgggtgaaattcgcatcgtcagcgag
tcaaacggacaggtattgattggtaataacgttccttatggagctacattgcttgtgaaa
gaaggtgagcgagttaccaaaggccacgaactttgtaactgggatccttacaacgccgta
atcttgtcagaatttaacggttctgctcagtacgaatcaatcgaagaaggtatcactttc
cgcgaagaaatcgacgaacaatcgggcttccaggaaatggtaatcatcgaaacacgtgac
cgtaccaaaaacccaggtatcttggtaaaaggtaagagcccactcttgaccgacgccgat
gagaagatttacaacttgcctgtaggtgcgcgtttggtaatcaaagatggagccaatgta
aaagcaggtcagcctttggcgaaattgccacgtacactcggtaaaacgcgtgatattacg
ggtggtttgccacgggtaacggaattgtttgaagcacgtaacccatctaacccagcggta
gtttctgaaatcgacggggtggttatctacggaattgtaaaacgtggtaaccgcgaaatc
aatatcgagtcgaaagacggcacgcgtaagaaataccttgtgcctttgtcgaaacacatc
ttggtgcaagatggtgactacgtgaaagcgggtgaaccactttctgatggtgccattacg
ccaagcgacatcttgtcgatcaaagggccaacggcggtacaagaatacttggtaaacgaa
attcaggaagtttaccgtctccaaggggtgaaaatcaacgataagcacattgagtgtatt
gtacgccaaatgatgcagaaagttgaaatcatggaagctggagataccaacttcttggaa
atgcaacccgtagataagtggacattccgcgaagaaaacgaccgtgttcttgacatgaaa
gtggtagaggattcgggcgattctgaaaacgtgaagccagggatgttgatttcggcgcgc
cgtttgcgtgacgaaaactctaccctcaagcgtcgtgatcagcgtttggtagtggcacgc
gatgccaaagcagccgttgcacaaccaaccttgatgggtattacgcaggcgtcgttgggt
accgaaagctttatctcagccgcgtctttccaagagacgaccaaagtgttgagcgaagcg
gcggtacgcggaaaacgcgataccctcgatggcttgaaagaaaacgtaattgtaggtcac
cttattccagcaggaacgggtgtacgccgctaccagaaaaacatcattggttcgaaagaa
gaactcgaaaccgtgaccgaatcacgtgagcgtagcagctcgcgtcgtagcaaacgtgaa
ttagcaaactaa
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integrated database retrieval system
