Runella sp. SP2: DTQ70_26460
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Entry
DTQ70_26460 CDS
T05690
Name
(GenBank) ATP-dependent helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rup
Runella sp. SP2
Pathway
rup03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rup00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DTQ70_26460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rup03019
]
DTQ70_26460
Enzymes [BR:
rup01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DTQ70_26460
Messenger RNA biogenesis [BR:
rup03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DTQ70_26460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Flavi_DEAD
AAA_19
P-loop_SecA
DUF5882
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AYQ35489
LinkDB
All DBs
Position
complement(6553676..6555052)
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AA seq
458 aa
AA seq
DB search
MYFKKSTLKDNTNNRFIVTFEEFNLNRQLLNAIADAGYETPSPIQEKAIPLVLQGHDVLG
IAQTGTGKTAAYLLPILMKIKYAQGQTPRALILAPTRELVMQIDAAVSELGKYTDLRHLA
LYGGLGPKTQIETLQKGIDIIVATPGRFLDLYLRGEIGVKQLSVLVLDEADKMMDMGFMP
QINRILEVIPRKRQNLLFSATFPPKVERLSENFLEAPVRVEVTPQATTASRVEQVMYEVP
NFRTKINLVEHFAQHAEEFQRVIIFARSRETAENIYKFLKRKVVNEEEVRVIHANKGQNT
RINSMEAFKDGNVRLLIATDVAARGIDVSQVSHVINFDVPLIYEDYVHRIGRTGRANQEG
NAITFMTIADEYHIAKIETIIRMKIPRVPLPAEIDVPETPFEEQQEYLREIDAQRKKEDP
TFKGAFHEKKNKKVVNSKPTKKTSTPTKKHKKYDRRKK
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atgtatttcaaaaagagtacgttaaaagacaatacaaacaatcgttttatagtgactttc
gaagaatttaacctcaaccgtcaacttctcaacgccatcgccgatgcaggttacgagacg
ccttcccctatccaagagaaggcgattccgctggtattacaaggccatgatgtgttagga
attgcccaaacgggcacgggaaaaacagcggcttatttgttgcctatcctaatgaaaatc
aagtacgcacaaggccaaacccctcgtgcgcttattctagctcctacccgcgaactggta
atgcagattgatgctgctgtttcagaattaggcaaatatactgacttgcgccatttggca
ttatacggtggcctcggccctaaaacccaaattgaaacgcttcaaaaaggaatagacatc
atcgttgccactccaggtcgcttcttggatttgtacctaagaggtgaaattggggtaaaa
caactttcggtactcgtactcgacgaagccgataaaatgatggacatgggctttatgccc
caaatcaaccgtattttggaagtgattccgcgcaagcgccagaatttgttgttctcggcc
acctttcctcccaaagtagaacggctttcagaaaacttcctcgaagcccctgtacgcgtt
gaagtaacgcctcaagctaccactgcctcacgggtggagcaggtcatgtacgaggttccc
aattttagaaccaaaatcaacctcgtagagcattttgctcaacatgccgaagagtttcaa
cgcgtcatcatttttgcccgttctcgcgaaactgcggagaacatttataagtttttgaag
cgtaaggtcgttaatgaagaagaggtacgcgttattcatgccaacaaaggacaaaatacg
cgcatcaactcgatggaggctttcaaagatggcaacgttcgcctcctgattgccaccgac
gttgcggctcgcggtatcgacgtttctcaggtaagccacgtgattaattttgacgtgccg
ctgatttatgaagactatgttcaccgcattgggcggacagggcgcgccaatcaggaagga
aacgcgattacgtttatgacgattgcggacgaataccacattgccaaaatcgaaaccatc
attcggatgaagattccgcgtgtaccacttcctgccgaaattgacgttcccgaaacgcct
tttgaagaacaacaggaatatttgcgcgaaatcgacgcacaacgtaaaaaagaagacccc
acatttaagggcgcttttcatgaaaagaaaaacaaaaaagttgtaaattcgaagcccaca
aagaagacatccacacccacaaagaagcataaaaagtacgaccgacgaaaaaagtaa
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