Ruminococcus bicirculans (ex Wegman et al. 2014): RBI_I00008
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Entry
RBI_I00008 CDS
T03158
Symbol
gyrA
Name
(GenBank) DNA gyrase subunit A
KO
K02469
DNA gyrase subunit A [EC:
5.6.2.2
]
Organism
rus
Ruminococcus bicirculans (ex Wegman et al. 2014)
Brite
KEGG Orthology (KO) [BR:
rus00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rus03032
]
RBI_I00008 (gyrA)
03400 DNA repair and recombination proteins [BR:
rus03400
]
RBI_I00008 (gyrA)
Enzymes [BR:
rus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
RBI_I00008 (gyrA)
DNA replication proteins [BR:
rus03032
]
Prokaryotic type
DNA Topoisomerases
RBI_I00008 (gyrA)
DNA repair and recombination proteins [BR:
rus03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
RBI_I00008 (gyrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_topoisoIV
DNA_gyraseA_C
Motif
Other DBs
NCBI-ProteinID:
CCO03748
LinkDB
All DBs
Position
I:7329..9866
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AA seq
845 aa
AA seq
DB search
MSDYNVIDTDVEAIMKESFIQYSMAVIVSRALPDVRDGLKPVHRRILYTMYENGLTPDQA
YRKCADTVGSVLGKYHPHGDASVYDALVRLAQKFSMRYPLVDGHGNFGSVDGDPPAAYRY
TEAKMAKMSVNMLTDINKTTVDFQSNYDDRLKEPVVLPSRFPNLLCNGSVGIAVGMATNI
PPHNLHEVIEGMKTVMKNPDCTLDELMQSIKGPDFPTGGIIMGRSGIRAAYGTGRGKITL
RSKTSIEEIKGRNCIIVTEIPYMVNKARLVESIADLVKEKRIDGIHYINDESGKDGMRIV
IELKKDANPQVVLNKLFSYTQLQDTVGVIMLALVNGIPKVLTLKEMLEQYIDFQVDVITR
RTKFDLNKAKEREHVLKGLVIALDNIDEVIEIMKTSKNIPEAKQRLNQRFGLTDIQADHI
ANMTLGRLTGMERQKIIDELAEIEVKIADLEDILANHQRILDIIIEEVEAIQDKFGDERR
TQIENVSGEVDIEDLIPVEESVVTYTNAGYIKRMPVSEYKAQKRGGRGVTGMKQREDDYI
DELQTCSSHDNILFISNKGIMYKLKCYELPEGSKASRGTNIVNLLELGEGEKIAAMIKTA
DFDEGKYIVMVTKNGKIKRTPLTSYRNVRKNGLIAIGLDEGDEIAGVRMTFGDNEVIVAT
HNGYAIRIRETDIREMSRVAHGVKAIKLRGSDYVVSMARVRDGASVLTVAENGLGRRVPL
ESYKVQNRGGYGLMNYKSGGVCGIKVVDDEDDIIMISTDGIVIRIRACDISMMSRYSRGV
RLMRVGEDGRVVSFTRTEHDDDVETAEVEKATAEEIAEAQAEENAEVIEDNTESVENEDS
ENTEE
NT seq
2538 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgattataacgttattgacactgatgttgaagcgataatgaaagaatctttcatt
caatattcaatggcggtaattgtatccagagccttacctgatgtaagggacggacttaaa
cctgttcacagaagaattttatataccatgtatgaaaatggtcttacacctgatcaagct
tacagaaaatgtgctgacacagtaggttctgtgcttggtaaatatcacccacacggtgac
gcatcagtttatgacgcacttgtaagacttgctcagaagttctcaatgagatatcctctt
gttgacggtcacggaaactttggttccgttgacggcgaccctccggctgcctaccgttat
actgaggctaaaatggctaagatgtcagtaaatatgctgacagatataaacaaaacaact
gttgattttcagtcaaactatgatgacagactgaaagagcctgttgtgctgccgtcaaga
tttccaaatcttctttgtaacggctcagtaggtatcgctgtcggcatggcaacgaatatc
cctcctcataaccttcatgaagttatcgagggcatgaaaactgtcatgaaaaaccctgat
tgcacacttgatgagcttatgcagagcataaagggtcctgacttccctacaggcggtatc
atcatgggcaggtccggtatcagagcggcttacggtactggccgaggcaagataacactg
cgttcaaagacctctatcgaggagataaagggcagaaactgcattatcgtcactgagata
ccttacatggtaaacaaggcaagacttgttgagtctatcgctgaccttgttaaggaaaag
cgtatcgacggaatacattatatcaacgatgaatccggcaaggacggaatgaggatcgtt
atcgagcttaaaaaggacgctaatccgcaggtagttctcaacaagctgttcagctataca
cagcttcaggatactgtgggcgttataatgcttgctcttgtgaacggtatccctaaggtg
ctgaccctcaaggaaatgcttgagcagtatatagactttcaggtcgatgttatcacaaga
agaactaagttcgaccttaacaaggctaaggaaagagagcatgtcttaaagggtcttgtt
atcgcacttgacaatatcgacgaagttatcgagataatgaaaacttctaagaatatccct
gaggctaagcaaagacttaatcagcgttttggtcttacagatattcaggctgaccatatc
gcaaatatgaccctcggacgtctgaccggtatggaaagacagaagataatagacgagttg
gctgagatcgaagttaagatagctgaccttgaagatatccttgcaaatcatcagagaata
cttgatataatcattgaagaggtcgaggctattcaggataagttcggtgacgagagaaga
actcagatagaaaatgtcagcggtgaagttgatattgaagaccttatccctgttgaggaa
agcgttgttacttatacaaatgcaggatatataaagagaatgcctgtttcagagtataag
gctcagaagcgtggcggacgtggtgtaacgggtatgaaacagcgtgaggacgattatatc
gacgagcttcagacctgttcttcacatgacaatatactctttatctccaataagggcata
atgtataagctcaaatgctatgagcttccggaaggctcaaaggcttcaagaggcacaaat
atagtaaatcttcttgaacttggcgagggcgagaagatagccgcaatgataaaaactgcc
gactttgacgagggcaagtatatcgtcatggtaacaaagaacggcaagataaagagaact
ccgctgacttcctacagaaatgtaagaaagaacggtcttattgcaatcggtcttgatgag
ggcgatgagatagcaggagtaagaatgacctttggcgacaatgaggttatcgttgcaacg
cataatggttatgctatcaggataagagaaactgacataagagagatgtcaagagttgca
catggcgtaaaggctattaaactcaggggcagcgactatgttgtatcaatggcaagagta
agagatggtgcaagcgttctcactgttgctgaaaatggtcttggcagacgtgttccgctg
gagtcttataaggtacagaacagaggcggctatggtcttatgaactataagagtggcgga
gtatgcggaataaaggtcgttgatgatgaagatgatatcatcatgatatccacagacggc
attgttatcagaataagagcctgcgatatcagtatgatgagcagatactcccgtggcgta
agacttatgagagtcggcgaggacggcagagtggtttcattcacaagaactgagcatgac
gatgatgttgaaacggcagaggtagaaaaggctactgccgaggagatagcagaggctcag
gctgaggaaaatgctgaggtcattgaagataataccgaaagcgttgagaatgaggattct
gagaacacggaagaataa
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