Ruminococcus bicirculans (ex Wegman et al. 2014): RBI_I00062
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Entry
RBI_I00062 CDS
T03158
Symbol
truB
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
rus
Ruminococcus bicirculans (ex Wegman et al. 2014)
Brite
KEGG Orthology (KO) [BR:
rus00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rus03016
]
RBI_I00062 (truB)
Enzymes [BR:
rus01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
RBI_I00062 (truB)
Transfer RNA biogenesis [BR:
rus03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
RBI_I00062 (truB)
Prokaryotic type
RBI_I00062 (truB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB-C_2
PUA_3
Motif
Other DBs
NCBI-ProteinID:
CCO03802
UniProt:
A0ABM9QDV1
LinkDB
All DBs
Position
I:72408..73322
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AA seq
304 aa
AA seq
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MSLDNSKDNICGILPVKKPEGWTSFDVIAKLRGVLRIKRLGHSGTLDPMATGVLPVFVGR
ATKACDIIPDRRKVYTAGFQLGVSTDTLDSTGKTLKTSDKAVTRADLECAKSSFVGDIMQ
VPPMYSAIKVNGKKLYELARAGKEIEREPRAVHIDSIDIIEYDEASRRGVMKVDCEKGTY
IRSVISVIGEKLGCGGMMTSLERSYSGGVDIKDCYTIEEIAEICEQDKLSQMLIPLDRAF
VSYEKTTLGQWETKLYRNGVKLRPEQTGIKDLSEDKLYRVYGSDNSFLGIGAFHEGSFRS
FKNF
NT seq
915 nt
NT seq
+upstream
nt +downstream
nt
atgagcttggataacagcaaggataatatctgcggcattttgcctgtaaaaaagcccgag
ggctggacttcttttgacgttatcgcaaagctcagaggcgttctaaggataaaaagattg
ggtcattcagggacccttgaccctatggcaacaggcgttctgcctgttttcgtgggcaga
gccacaaaagcctgcgatattatccccgacagacgaaaggtctataccgcaggctttcag
cttggggtaagcaccgataccttagacagcacaggaaagacgttaaaaacaagcgacaag
gcagttaccagagccgaccttgaatgtgcaaaaagcagttttgtaggcgatatcatgcag
gtgccgcctatgtattctgcaataaaagtgaacggcaaaaagctctatgagcttgcaaga
gcaggcaaagaaatagagcgtgagccgagagctgtccatatcgacagcattgatataata
gaatatgacgaagcttcacgcaggggcgtaatgaaagttgattgcgaaaaaggtacttat
atacgctccgttatcagcgttataggtgaaaagcttggctgcggcggaatgatgacttct
cttgagcgttcctattcagggggcgtcgatataaaggattgctataccatagaggagata
gccgaaatttgtgagcaggacaagctgtcacaaatgcttatcccacttgacagagccttt
gtaagctacgaaaaaactacccttggacagtgggaaacaaagctttatagaaacggagta
aagctcagacctgagcagacagggataaaagatctgtcagaggacaagctctaccgtgtc
tacggcagtgataacagcttcctcggtatcggcgcttttcatgagggcagcttcagaagc
ttcaaaaatttctga
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