Ruminococcus bicirculans (ex Wegman et al. 2014): RBI_I00136
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Entry
RBI_I00136 CDS
T03158
Symbol
mfd
Name
(GenBank) Transcription-repair coupling factor (superfamily II helicase)
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rus
Ruminococcus bicirculans (ex Wegman et al. 2014)
Pathway
rus03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rus00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RBI_I00136 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rus03400
]
RBI_I00136 (mfd)
Enzymes [BR:
rus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RBI_I00136 (mfd)
DNA repair and recombination proteins [BR:
rus03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RBI_I00136 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
CCO03876
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All DBs
Position
I:160736..164191
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AA seq
1151 aa
AA seq
DB search
MNIFYEMASRLGFYKDVKNCLLKGFTPCAVTGVSNIHKAQTAMALSRLSPCLVICDDEAS
AIRMTGDINEMAGEQLACVFPAKDLNFAYMEGVSREYEHKRLEALSLITQGKCKIIAASM
EACLQGTIPQDKLKEFSFEIKTGGELSLEELTSKLLAGGYTRTDQVEGQAQFSVRGSIAD
IFPVQESRPVRIELWGDEVDSISYFDPESQRRTDPIDEITVFPALEIIFPDTDDLVAKLE
ALSKSVRGSRTDKIRTNISRDIETAQSGITLTNLDKYYTVCYDKLTTVFDYFESGVCLVS
EYTNCIEKGKAALAQLSEDMKLLYEDGILFRKLEGFYLDIPQAELKITQMKSVFLDSFMR
SNNGVKFKKLINTDCRQTAAWGGNIINLEEELKNLCSQGYCTVVLAGSEKTLPIINKDLN
DAGISAEILTEDSEIIKGKVYLRTGCLSGGFDYPDIGCAAITQMKAMSAKKRKSHHKAGE
EIKSLSDIQTGDLVVHAMYGIGRFSGIKNIETNGVTKDYITIKYAGTDVLYVPVTQLDLV
SRYIGPRDDGAVKLNKLNSMEWTKTRNKVKSAVKDMAEELTKLYAQRQMAKGFAFSPDND
WQADFEERFDYQETDDQLRSIQEIKTDMEKPSPMDRLLCGDVGFGKTEVALRAAFKCMLD
NKQVAILVPTTVLAWQHYQTAIKRFEHFPVKVELLSRFRKPKEQQQIIRELNRGTIDLII
GTHRLVQKDVKFKDLGLVIIDEEQRFGVAHKEKFKETFKGVDVLTLSATPIPRTLNMAMS
GIRDMSVIEEPPMDRHPVQTYVIEHNMGVIAQAISKELRRGGQVYYIHNRVETIMMTANK
LQEMLPDARIAFAHGQMPEEELSEIWRQLCDREIDILVCTTIIETGVDVPNVNTLIIEDA
DRLGLSQLYQLRGRVGRSNRRAFAYFTFRRGKVLTEVAAKRLDAIREFTQFGSGFRIALR
DLEIRGAGSILSGKQHGHMEAVGYDMYLRLLNEAIAEQKGEALPPSPEDCLVDISIDAFI
PDHYIENLSQRIDCYRKIASIGNEEDSRDVIDELIDRYGDPPKSVLGLVNVALTRNTASK
LGIKEITQRGDKVLFFVKTAEVEQIQALYGAYKNRIRFFDGDKPYFAVTLEKKQKAAELM
AETVRLMRNEK
NT seq
3456 nt
NT seq
+upstream
nt +downstream
nt
atgaatattttttacgaaatggcgagccgtcttggcttttataaagatgtgaaaaactgc
ctgctcaaagggtttaccccttgtgcggtcacgggcgtttcaaatatacacaaggctcag
accgcaatggctctaagcaggctttccccttgccttgttatatgcgacgatgaagcgtca
gccattagaatgacaggggatataaacgaaatggctggggaacagcttgcctgcgttttt
cctgcaaaggatctgaactttgcatacatggagggcgtttcaagagaatatgagcataaa
aggctggaggctctttctctcatcactcagggcaagtgcaagataatcgccgcaagtatg
gaagcttgcttgcagggaactattccgcaggataagctgaaagagttttcctttgagata
aaaacagggggcgaactgagtcttgaggagcttacaagcaagcttcttgcaggcggttat
acaagaacagatcaggtggagggtcaggcgcagttttctgtgagaggctctatcgccgat
atatttcctgtgcaggagtcacgccctgtgagaatagagctttggggcgacgaggttgac
tctatatcatattttgaccccgaaagccaaagacgtaccgaccctatagacgagataacg
gttttccctgccttggagataattttccctgacactgatgaccttgtggcaaagcttgaa
gccttgtcgaagtctgtccgtggaagccgtaccgataagataagaacgaatatttcaagg
gatatagaaacggctcagagcggtatcacgctcacaaatcttgataagtattatactgtg
tgctatgacaaactcacaacagtgtttgattactttgagagcggtgtttgccttgtgtcg
gagtatacgaactgtatcgaaaagggcaaggcggctcttgctcagctttcagaggatatg
aagcttctttatgaggacggcatacttttcagaaagttggagggcttttatcttgatata
ccacaagcggaactaaaaataacacaaatgaagtcggtgtttcttgacagttttatgcgt
tcaaataacggtgtgaagttcaaaaagcttatcaataccgactgccgacaaacggcggct
tggggcggtaatatcatcaatcttgaagaagaactgaaaaatctctgctctcaggggtat
tgtactgttgtgctggcaggctcggaaaagacgcttcctattataaataaagaccttaat
gatgctggcatctctgcggagatcctcactgaggacagcgagataataaagggtaaagta
tacctgcgcacgggctgtctgtcaggtggctttgattatcctgacataggctgtgcggct
atcactcagatgaaagccatgagtgcaaagaagcgtaaatcccatcacaaggcaggagaa
gagataaaaagcctgtcggatatacagacaggcgatcttgttgttcacgctatgtacgga
ataggcagattttcaggaataaaaaatatagaaacgaacggtgtaacaaaggattatatc
accataaaatatgcaggtacggacgtgctttatgtgcctgttactcagcttgaccttgtg
tcaagatatataggtcctagagatgacggggcagtgaagcttaataagctcaactctatg
gagtggactaagacacgaaacaaggtaaagtctgccgtaaaggatatggcggaggagctt
acaaagctttatgctcaaagacaaatggcaaagggttttgctttttcccctgacaacgat
tggcaggcggattttgaggagcgtttcgactatcaggaaaccgacgatcagttaagatct
atacaggagataaagacggatatggaaaagccgtccccaatggacagacttctttgcgga
gatgtgggcttcggcaaaacggaggtggctctccgtgcggcgttcaagtgtatgctcgat
aacaagcaggtggctatacttgtgccaacaactgttcttgcatggcagcattatcagacg
gcgataaaaagatttgagcatttccccgtgaaggtggagcttttgtcgaggtttagaaaa
ccaaaggagcaacagcagataataagagagctgaaccgtggcactatcgaccttatcata
ggcacgcacaggcttgtgcagaaagacgttaagttcaaggacttgggtcttgttatcata
gacgaggaacagcgttttggtgttgcccataaggaaaagttcaaggaaactttcaagggc
gttgatgtgcttacactttcggctaccccgataccaagaacgcttaacatggcaatgagc
ggtatcagagatatgtcggtcatagaggagccacctatggacagacaccctgttcagacc
tatgttatagagcataatatgggcgttatagcgcaggccataagcaaggagctgcgacgt
ggcggtcaggtgtattatatccacaacagggtggaaactatcatgatgaccgcaaataag
cttcaggaaatgctacctgacgcaaggatagcgttcgcacacggacaaatgcccgaggag
gagttgtcggaaatatggcggcagctttgcgacagagaaatagatatccttgtctgcacc
accataatcgaaacgggtgttgacgtgccgaatgtaaatacacttataatagaggacgct
gacagattgggactttcacagctttatcagctccgtggacgtgtgggaagatcaaaccgc
cgtgcttttgcgtacttcactttcagacgtggcaaggtactcacggaggtagcggcaaaa
aggctagacgcaataagagagttcacgcagttcggttcaggcttcaggatagcgttgcgt
gaccttgagataagaggtgcaggctcgatactcagcggtaaacagcatggacatatggaa
gctgtgggatatgatatgtatctgcgacttctaaatgaggctatagctgaacaaaagggc
gaggctctgccaccgtcacctgaggattgtttggtggatatatccatagacgcatttata
cctgaccattatatagaaaatctgtcacagaggatagactgctataggaagatagcttcc
ataggcaatgaggaggattccagggacgttatcgacgagcttatagatagatacggtgac
ccaccgaaatcagtgctgggattggtgaacgttgcacttacgagaaatactgcttcaaag
cttggcataaaagaaataacacaaagaggtgataaggtgctgttctttgttaaaaccgca
gaggtggagcagatacaagcgttgtatggagcttataagaataggatcaggttttttgac
ggagataagccgtattttgcagtgacattggagaaaaagcagaaagctgcagaattaatg
gcggaaacggtaagattaatgaggaatgagaagtga
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