Ruminococcus bicirculans (ex Wegman et al. 2014): RBI_I00657
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Entry
RBI_I00657 CDS
T03158
Name
(GenBank) conserved hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
rus
Ruminococcus bicirculans (ex Wegman et al. 2014)
Brite
KEGG Orthology (KO) [BR:
rus00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rus03016
]
RBI_I00657
Enzymes [BR:
rus01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
RBI_I00657
Transfer RNA biogenesis [BR:
rus03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
RBI_I00657
Prokaryotic type
tRNA splicing ligases
RBI_I00657
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
CCO04380
UniProt:
A0ABP1WF75
LinkDB
All DBs
Position
I:733321..734556
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AA seq
411 aa
AA seq
DB search
MFEYYDKDKMLVPIKIWTESIDDIEESCLEQAINLANLPFAHDHIALMPDTHTGKGMPIG
GVIACKNTVIPNAVGVDIGCGMAFVQTDIPVSILRDTVTGSGELIKVIVGNILRTIPVGF
SHYGKPQTSAVLDKAQSEIERYNADSELLKFIEQGYYSVGSLGGGNHFIEIQEDESGMAC
IMLHSGSRMFGNMIGQYFNKIAHEMNDKYFSTVSSEYNLPFLPVDTDEGQRYLNWMKLAM
DFAFENREVMLEKVKHIFTEQVEKYTGITSNYSDEINCHHNYAALENHYGENVWVHRKGA
IHAAEGEVAIIPGSMGSNSYIVRGMGKAESFLTSSHGAGRNYSRTGAKEKFSVESVMVDL
RQRNVVLGKTSKKDVAEECRFAYKDIDVVMKNQSDLTTPIKKLFTVGVVKG
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atgtttgaatattatgataaagataaaatgctagtaccgatcaagatatggacagagtct
atagacgatatcgaggaaagctgtcttgagcaggcgataaaccttgcaaatcttccattt
gcccatgaccatatcgcattgatgcctgatactcatacaggaaagggaatgcctataggc
ggtgtgatagcctgcaaaaatacggtaatcccaaatgcagttggcgttgacatcggctgt
ggaatggctttcgtgcagacagatatccctgtgagcattcttcgtgacactgtaacaggg
agcggcgagcttataaaggtgatagtaggaaatatactccgtactatcccggtgggtttt
agtcactacggcaagccacagacttctgccgtgcttgataaggcgcaaagcgagatagaa
agatacaatgctgacagcgaattgctgaaatttatcgagcagggatattattccgttggc
tcattgggtggtggaaaccattttatcgagatacaggaagacgaaagtggcatggcttgt
ataatgctccattcgggaagccgaatgttcggcaacatgatagggcagtatttcaacaag
atagcccatgagatgaatgacaagtatttttcaactgtttcctcagagtataatttgccg
tttctccctgtggatacagacgagggtcagagatatctcaactggatgaagcttgcaatg
gactttgcttttgaaaacagagaggtaatgcttgaaaaggtaaagcatattttcacagag
caggttgagaagtatacgggtatcacatcgaactatagtgacgagataaactgtcaccat
aactatgccgcattggaaaatcactacggtgagaacgtgtgggtacaccgcaaaggcgct
atccatgcggcagagggcgaagtcgctataatcccaggatctatgggctcaaacagctat
atagtcaggggcatgggcaaggctgaaagctttttgacttcttctcatggtgcaggcaga
aactattcacgcacaggcgcaaaggagaaattctccgttgagtctgttatggtagacctg
aggcaaagaaacgtggtgcttggaaagactagtaagaaagacgtggctgaggagtgccgc
tttgcttacaaggatatagatgttgttatgaaaaatcaaagtgacctgacgacccctata
aagaagcttttcacagtgggtgttgtcaaaggatag
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