Ruminococcus bicirculans (ex Wegman et al. 2014): RBI_I00834
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Entry
RBI_I00834 CDS
T03158
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rus
Ruminococcus bicirculans (ex Wegman et al. 2014)
Pathway
rus03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rus00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RBI_I00834 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rus03019
]
RBI_I00834 (recQ)
03400 DNA repair and recombination proteins [BR:
rus03400
]
RBI_I00834 (recQ)
Enzymes [BR:
rus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RBI_I00834 (recQ)
Messenger RNA biogenesis [BR:
rus03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RBI_I00834 (recQ)
DNA repair and recombination proteins [BR:
rus03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
RBI_I00834 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
Helicase_Sgs1
ResIII
Phage_ABA_S
Motif
Other DBs
NCBI-ProteinID:
CCO04556
LinkDB
All DBs
Position
I:complement(944776..947061)
Genome browser
AA seq
761 aa
AA seq
DB search
MTDFHNKYSVLQDFFGHSQFRNGQEQIIDSILAGRDCLGVMPTGAGKSMCYQIPALMFDG
ITIVVSPLISLMKDQVNSLIQSGVRAAYLNSSLTAAQYEMAISNAARGMYKIIYVAPERL
MTGSFLSLASSVKISMLAVDEAHCVSQWGQDFRPSYMKIPEFLGKLPYRPIVSAFTATAT
AEVKADIIKMLELRDPFTITTGFDRKNLYFGVSHPHDKYSEAVRIVEKYKDNCGIIYCST
RKNVESVCEKLCADGYNASRYHAGLSDEERRKNQDDFIFDRVQVMVATNAFGMGIDKSNV
SYVIHYNMPKNIESYYQEAGRAGRDGNEAKCILLYSGQDVATNKFLINNSHDNPDLDDDT
LEMIRKRDLMRLKKMTDYCNTNGCLREFILGYFGEKQDKPCQNCSGCLGDFGETEEVDVS
VDCQKVLSCIYRLHQRNLSFGAGVIAQILKGSDSEKVKRFDLSTLSTYGIMKDSTQVYIR
RLIAFLEADDYITQTSHGDFSVLTLTRRSAEILMDKKTITIRLPKKKPKSETVTKIGRDE
VTTFDKELFGRLRAVRSKLATQASLPAYIILTDASLRDMCIKLPKTQTELLNISGVGKSK
QERYGRYFVAEIQKYLKENPDAASGYKYIPEGYLQKQNAVGGQSTKEYIIAHAGELSGKE
QDMTLSEVCDSIFYQLGTDGDIRSIKLAIKEWLIGENYLAKDGANGRGFLETTILSPEAG
IIEREKISQLGNSYKTILFPKQAQEFIFDNIEEILSKDAQN
NT seq
2286 nt
NT seq
+upstream
nt +downstream
nt
atgacagattttcacaataagtattcagtgcttcaggactttttcgggcactctcagttc
agaaacggtcaggagcagataatagacagcatacttgcagggcgtgactgccttggagtt
atgccaacaggcgcaggcaaatctatgtgctatcaaatacctgctcttatgtttgacggg
ataactatagttgtttcgccgctcatatcccttatgaaagatcaggtgaactcgctgata
caatctggagtgagggcagcgtatctgaactcctcactgacggcggcacagtatgaaatg
gctatatcaaacgccgcccgtggtatgtacaagataatatatgttgcacctgaaaggctg
atgacaggatcgtttctgtcactggcttcgtcggtgaagatatccatgcttgcggtggac
gaagcccactgcgtttctcagtggggacaggatttcagaccttcctatatgaagataccc
gagtttcttggtaaacttccctaccgtcccatagtcagtgcattcaccgccactgccacc
gcagaagtaaaagcagacattatcaaaatgcttgaactacgtgaccctttcaccataacc
acaggctttgacagaaaaaatctctactttggcgtttctcaccctcatgacaaatacagt
gaagcagtgaggatagttgagaaatacaaggacaactgcggaataatctactgctccaca
agaaaaaatgttgagagcgtgtgtgaaaagctctgtgccgacggctacaacgcttcacgc
tatcatgcaggactttctgatgaggaaaggcgtaaaaatcaagatgattttatttttgac
cgtgtccaggtcatggtggcgaccaatgctttcggcatgggaatagacaaatcaaacgtg
agctatgtcatacattacaatatgcctaagaatattgaaagctattatcaggaggcaggc
agagcgggacgtgacggaaacgaagcaaagtgcattttgctctacagcggtcaggacgtt
gcgaccaacaagtttcttataaacaattcacatgacaatcccgaccttgacgatgacact
cttgaaatgatacgcaaacgtgatcttatgcgtctgaaaaagatgaccgattactgcaac
acaaacggctgtctgagagagtttatccttggatatttcggtgagaagcaggacaagcct
tgtcagaactgctcaggctgtttgggtgatttcggagaaacagaagaagttgacgtgtct
gtagattgccaaaaagtgctttcctgcatttatagacttcaccagcgaaacctttctttt
ggagcaggtgtcatagcacagatacttaaaggctcagactccgaaaaggtaaagcgtttt
gacctttccactctttcaacctacggcataatgaaagactccacgcaggtatatatccgc
aggctcatagcttttcttgaagctgatgattacatcacacagacttcacacggggatttt
tctgtgcttacacttaccagaaggtctgcagagatattaatggacaaaaagactattaca
atacgccttccaaagaaaaagccaaagagcgaaacggtcacaaagatcggcagggacgaa
gttacgacatttgacaaggagcttttcggacggctcagagctgtgcggagcaagcttgcg
acacaggcgagtctgcctgcatatatcattcttacagacgcttcactgcgtgatatgtgt
ataaagctgcctaagacgcagacggagcttttgaatatctcaggggtgggaaagtcaaag
caggaacgttatggaagatactttgtagctgagatacagaaatatctcaaggaaaatcct
gacgctgcttcgggttataaatatatcccagagggctatctgcaaaaacaaaatgcggtt
ggcggtcaaagcacaaaggaatatataattgcccacgcaggtgagctttcaggcaaggaa
caggatatgaccctttcagaagtatgcgacagcattttctatcagctcggcacagacggc
gatataagaagcataaaacttgccataaaagaatggctcataggtgaaaattatcttgca
aaagacggtgcaaacggcaggggctttcttgaaactacaatactttcccctgaagcagga
ataatagagcgtgaaaaaatatcacagcttggaaacagctacaaaacgatactttttcca
aagcaagcgcaggagtttatctttgataacatagaggagatactcagcaaagatgcacaa
aactaa
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