Ruminococcus bicirculans (ex Wegman et al. 2014): RBI_I00974
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Entry
RBI_I00974 CDS
T03158
Name
(GenBank) Ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
rus
Ruminococcus bicirculans (ex Wegman et al. 2014)
Pathway
rus03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rus00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RBI_I00974
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rus03019
]
RBI_I00974
Messenger RNA biogenesis [BR:
rus03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RBI_I00974
BRITE hierarchy
SSDB
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
CCO04689
UniProt:
A0AAN2NK55
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All DBs
Position
I:1098524..1100428
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AA seq
634 aa
AA seq
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MNEKNNTVKNPTQKRFFRKKQNKSEIPLAQASKELDRVKSQRASGSVKKTLQPRNETPQR
KPQNTQQRRPRPAANRVKEPVRRTPVKIIPLGGLNEIGKNFTVIECSNDMFVIDCGLAFP
DSEMPGVDIVIPDFSYVEKNQEKLRGVVLTHGHEDHIGGLPYFLKKFNVPVYGTRLTLGL
VEGKLKEHGLLGTVKLNVVTPRQTVKLGCMAVEFIRVNHSIPDAVGMAIHTPAGVLIHTG
DFKVDYTPIEGGIIDLPRFAELGNKGVLALMADSTNAERPGYTMSERKVGESFVKLFNKA
EGKRIIIATFASNVHRVQQIINNAVTHGRKVAVSGRSMVNVISKGIELGYLKVPDGVLVD
IDTISRYAPEKMVIVTTGSQGEPMSALTRMSANEHRNVTITPMDFIIISANPIPGNEKYV
TKVVNDLMRLGAEVIYESMYEVHVSGHACQEEQKLLLSITKPKFFIPVHGEYKHLMKHRD
TALSVGIPESNIIIADIGNVIETDGVDMKITGQVPAGKVLVDGLGVGDVGAIVLRDRKHL
AQDGLIIAVATIDRASGDILAGPDVVSRGFVYVRESEELMTEAQKLLTETLQDCLDRNMK
DWNTIKGRMKDNLSDFIFTKTKRSPMILPIIMEL
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaaaagaacaacacagtaaaaaatcctacacaaaaacgtttttttagaaaaaaa
cagaataagagcgagatacctctggctcaggcttcaaaagagcttgaccgtgtaaaaagt
cagagagcttcgggcagtgtgaaaaaaacgcttcagccgagaaatgaaactccacagaga
aaaccgcagaatactcagcaaagacgtccaagacctgcggcgaacagagtgaaagagcct
gtaagaagaacgcctgtgaagataatccctcttggcggtcttaacgagataggcaagaat
ttcactgttatcgagtgttcaaacgatatgttcgttatcgactgcggattggcttttcct
gacagtgaaatgcctggcgttgatatcgttatccctgatttctcatacgtcgagaaaaat
caggaaaagctcaggggcgttgtgcttacacatggtcatgaggatcatataggcggtctg
ccgtattttctgaaaaaattcaacgtgcctgtttacggcacaaggcttacccttggtctt
gttgagggcaagctgaaagagcatgggcttttaggaactgtaaaactcaacgttgtaacg
ccaagacagacagttaagcttggctgtatggcggtggagtttataagagtaaatcactct
atccctgatgccgtgggaatggctatccatacccctgctggtgtgcttatccatactggt
gacttcaaggtagactatacacctatcgagggcggtataatcgacctgcctagatttgca
gagcttggaaacaagggcgttttggctcttatggctgactctacaaacgctgaaagaccc
ggctataccatgagcgagcgcaaggttggcgaaagctttgtgaagcttttcaacaaggct
gagggcaagaggataatcattgccactttcgcttcaaacgttcacagagttcagcagata
ataaataacgctgtcacacacggcagaaaagtggctgtgtcaggcagaagtatggtgaat
gttatctcaaagggcatcgagcttggctatcttaaagtgcctgacggtgtgcttgtggat
atcgacactatatcgagatatgcacctgaaaaaatggtcatcgtcacaacgggaagtcag
ggcgagcctatgtcggcgcttacaagaatgtcggcaaacgagcataggaacgttactatc
actcctatggactttatcataatctcggctaatcctatccccggcaatgaaaagtatgtc
acaaaggtagtaaacgaccttatgagattgggtgcagaggtaatatatgagtctatgtat
gaggtgcacgtttcaggacacgcttgtcaggaagagcagaaattgttgctttctatcaca
aagccaaaattctttatccctgtacacggtgagtataaacatcttatgaagcacagagat
acggcgctttctgtgggaatccctgagagcaatataatcattgctgatataggcaacgtt
atcgaaacagacggcgttgacatgaagataacaggacaagtgcctgctggaaaggtactt
gtggacggtcttggagttggtgacgttggcgcaatagttctccgtgacagaaaacatctt
gctcaggacggacttatcattgccgtggcaactatcgacagggcttcgggagatatcctt
gcagggcctgatgtggtttcaagaggctttgtgtatgtaagagagagcgaggagcttatg
actgaagctcagaagcttcttaccgaaacacttcaggattgtcttgataggaatatgaag
gattggaataccataaagggcagaatgaaggacaatctttcggactttatcttcacaaag
acaaagagaagtcctatgattttgccgataataatggaattatga
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