Ruminococcus bicirculans (ex Wegman et al. 2014): RBI_I01005
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Entry
RBI_I01005 CDS
T03158
Symbol
priA
Name
(GenBank) primosomal protein N'
KO
K04066
primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rus
Ruminococcus bicirculans (ex Wegman et al. 2014)
Pathway
rus03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rus00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
RBI_I01005 (priA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rus03400
]
RBI_I01005 (priA)
Enzymes [BR:
rus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RBI_I01005 (priA)
DNA repair and recombination proteins [BR:
rus03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
RBI_I01005 (priA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PriA_3primeBD
PriA_C
DEAD
ResIII
Helicase_C
Zn_ribbon_PriA
Zn_ribbon_6
DUF7129
PIF1
TrwB_AAD_bind
Zn_ribbon_ISL3
DUF6980
Motif
Other DBs
NCBI-ProteinID:
CCO04720
UniProt:
A0ABP1WFX3
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All DBs
Position
I:1127698..1130181
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AA seq
827 aa
AA seq
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MGRCTAVRGVFIVAKVAISRASYSFDALYSYSVPEELAQKVKSGVRVLVPFGRGNRKAVG
FVARTYTEAEYNDKLKPVISVVDGESLVTEEMMRIIMWLKENTFCTYYDAYKSVVPTGFS
YTFSQHYSLVNTYIDEDTLNEDEKNVVDFLRCAKSQREIDSFLDVHNDARKKKTVDSLVD
KGYVEISDALKRKVGDENVSMVRLSDEYVSGEIQTTLTPKQTLVVKLLEEGGCASVKEVC
YMTNCTSSILKRLADKKVIVQYKYEVMRDAIGELGERQDPDDIILNDEQSAAYEGIMGLI
KAEKPAGALLYGVTGSGKTSVFIKLIRSVMDMGKTAVMLVPEISLTPQMLGKFKSLFGDK
IAVMHSSLSLGQRTDEFKRVMRGEARIVIGTRSAIFAPVTNVGIIIMDEEGEPSYKSDST
PRYHARDVAIQRCGYNNCVLLMASATPSLESFYYAQKGRYHLFELKNRYSKSPLPAVEIV
DMQEEAAEGNDSLLSRVMCDKLTEVLAKKEQAILLLNRRGYTTYITCMDCRQPVACPNCN
IPLTYHKKNDRYMCHYCGYTMDNIEHCPQCGSQRLKSSGVGTQRVEDELERLFPQARLLR
MDADTTSSRYSYEENFKAFEKGEYDIMLGTQMIAKGLNFPNVTMVGVISLDKALFTGDFR
SYERTFSLLTQVAGRSGRGDKPGVAYIQTFVPDHYVLNLAAEQNYDEFYKEEIALRKSLT
YPPFCDICVIGFSAPLESKVIGASRWVTQLIKEYISQHKVNFPLRALGPAPCTFEMINNR
YRYRLILKTRNTANFREMIKHVLGEFYKNKDYQTVRIYADINGDIGL
NT seq
2484 nt
NT seq
+upstream
nt +downstream
nt
atggggaggtgtacggctgtgcgtggagtttttatcgtggcaaaggttgcaataagccgt
gcatcatacagctttgacgcactgtatagctatagtgtgccagaggagctggctcagaaa
gtgaaaagcggagtgcgtgtgcttgtgccttttggcagaggaaaccgcaaagccgtaggg
tttgttgcgagaacgtatacggaagccgagtataacgataagctgaagcctgttatttca
gtggtggacggggaaagccttgtaaccgaggaaatgatgaggataataatgtggctgaaa
gaaaacactttctgcacctattatgacgcttacaaatccgttgtgcctacaggcttttcc
tacactttttcacagcattacagccttgtcaatacctacattgacgaggatactttgaat
gaagatgaaaaaaatgtggtggactttctccgatgtgcaaaaagtcagagggagatagac
agctttcttgacgtgcataatgacgcacgaaagaagaaaactgtggattctcttgtggat
aagggctatgttgagatcagcgacgctttgaaaagaaaagtcggtgatgagaatgtcagc
atggtaaggctttctgacgagtatgtgtcaggggagatacagaccactcttaccccgaag
cagacccttgtggtgaagctgcttgaagagggcggctgtgcctctgtgaaagaggtctgc
tatatgaccaactgcacttcaagcatattaaaaaggcttgctgacaagaaagttatcgtg
cagtataaatacgaggtcatgcgtgacgccataggcgagcttggcgaaaggcaggaccct
gacgatatcatattaaatgatgaacaatcagcggcatatgagggcataatggggcttata
aaagccgaaaagcccgcaggtgcgttgctttacggcgttacgggaagcggcaagacgtct
gtgttcataaagcttataagaagcgttatggatatgggcaaaacagcggtcatgctcgtt
cctgaaatatcccttacaccgcagatgctcggcaaattcaagtcacttttcggtgataag
atagccgttatgcactcgtcattgtcgttgggacagcgtactgacgagttcaaacgtgta
atgcgtggggaagcaagaatagttatcggcacaagaagtgcaatatttgctcctgtcacc
aacgttggaataatcatcatggacgaagagggcgagccgtcatataagtcggactcaacg
cctagataccatgcacgagatgttgccatacagcggtgcggatataataactgcgtgctg
ttgatggcttctgcaacgccgtcgctggagagcttttattacgctcaaaagggcagatat
cacttgtttgagcttaaaaacagatattcaaagtcgcccctgccggcagtcgagatagtc
gatatgcaggaggaagcggcagagggcaatgacagcttgctcagccgtgttatgtgtgat
aagctcacagaagtgcttgcgaaaaaagagcaggctatcctgcttctgaacaggcgtggc
tatacaacgtatatcacttgcatggactgccgacagcctgtggcttgccctaattgcaat
atacccctgacctatcacaagaaaaatgatcggtatatgtgccactactgcggatatacc
atggataatatagagcactgtccacagtgcggctcacagcggctcaaatcaagcggtgtg
ggaactcagcgtgtggaggacgagcttgaaaggctttttccgcaggcaaggcttctgcga
atggacgctgacaccacttcttcgagatattcctatgaggagaatttcaaggcgtttgag
aaaggcgagtatgatataatgctcggcactcaaatgatagcaaagggacttaatttccct
aacgtcacaatggtgggtgtcatatcccttgacaaggcactgttcacaggggattttcgc
agctatgagagaacattttcactgctcactcaggtggcaggaagaagcggcagaggagat
aaaccaggggtcgcatacattcagacctttgtgcctgaccattatgtgctgaaccttgcg
gcagagcaaaattatgatgagttttataaagaggagatagcactgagaaagtcgctgaca
tatccgcctttttgcgatatatgcgtcataggcttttcggcaccccttgaaagcaaggta
ataggcgcttcacgctgggtgactcagcttataaaagagtatatctcacagcacaaggtg
aattttccccttagagcgctaggccctgcaccatgcacatttgaaatgataaataatcgc
tacagatacagacttatcctgaaaacacgcaatactgcgaattttcgtgagatgataaag
cacgttctgggcgagttctataaaaataaagattatcagacagttcgtatctatgccgac
ataaacggcgatatcgggctttaa
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