Ruminococcus bicirculans (ex Wegman et al. 2014): RBI_I01017
Help
Entry
RBI_I01017 CDS
T03158
Name
(GenBank) hypothetical protein
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
rus
Ruminococcus bicirculans (ex Wegman et al. 2014)
Brite
KEGG Orthology (KO) [BR:
rus00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rus03400
]
RBI_I01017
Enzymes [BR:
rus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RBI_I01017
DNA repair and recombination proteins [BR:
rus03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
RBI_I01017
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
AAA_30
DEAD
DUF6218
Motif
Other DBs
NCBI-ProteinID:
CCO04731
LinkDB
All DBs
Position
I:1143155..1146403
Genome browser
AA seq
1082 aa
AA seq
DB search
MSEEQIRSYIIDKDSYDKNILVEAGAGAGKTRLIIQRVIGQIGAGIPVEKIVLITFTNAA
ANELYERIQAGLTENIAKCSGEEKKLYENAVMNLQRMKISTIHSFCLSMLSEQPFEADLH
LGLKLAEDGETKQAQADFFERYYRTNGANIEDFGFLNSNQYKLRDSRVKNFLMETFLECA
EYRDVEFVRDKSYDSVTFDTINKLAYKEMCNYRDSLVRAFYNGALGGKYEDIAGFLVGDV
TKFFPDNMNVYDPKYNYVKVCANLKACKKFLEPFNKTKIKKDHPKSNENMAIFSPSGFDN
VKKENALYSLNKTATYIEQAVKAYQESEDGENVSNDGLLYHTHELLKNSSEARAFFKDKY
SCIYIDEFQDTDVMQTELLLYLCADDSNLVAGGDIWQCPLRDGALFAVGDPKQSIYGFRD
ADIRLYNKMKAKFQNNNEKNCEFFSLDYNFRSDEQLIAWVNEKFQPEINGKYGMTYSDMI
SKADKPAAVSDDVIRGAYFVKDPGAESVAKIISDLVKVGKIFDKGVERPIKYSDFLLLLW
NTTQMEFYSMVLTDRGIPYTMWGKRPQKNSLVLKRFIALAEFVFESYSPTAKEKAYSILW
RCRPDSIDFEDAEIDVDDYEQNCESNDATLVAVKASADTVNEPIAKLYKILDFPELLFDN
TSNREYELSNLIYLLEKWEKQDFAGSGELMDMMKNELSVLKEKELILDSSEQNCVRLMNL
HKAKGLEGNIVIMAEAKNHKFSGGKYTDLVAKRQVYVPLKTSDYSYMDYLTFYPNERKQA
EDKYFGEQLRLEYVAATRAKQAFIFVYTFERKKPVIDKLTMSKIGRELPQINNATAQSAV
QAAQINVKDIFDEVNNSRNAFDESVKKLSEKYVSKITPSHLEDGKKVTIPSGVEKLSYER
PKGIDIGHMVHRAFELAVNMRGKLFPYNETPQQNELIQKIVSRAYLDFEDECSSQDSESF
YKDYINYQLHSFLKDKDIEKLLKTAQAVYTELPFYSMDGNEYSNGVMDLVLKMSDKSFII
IDYKTNIQEEADRKLFEERILKTYRSQLDFYEKILRKMLSLSEETEVECHIYFMNDDKYM
KN
NT seq
3249 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaagaacagataagaagctatataatagacaaagacagttatgataagaatatc
cttgttgaagcaggcgcaggtgcaggtaagacaaggcttataatacagcgtgttataggt
cagataggcgcaggtatacctgttgaaaagatagtgcttataactttcaccaacgctgct
gcaaacgagctttatgagaggatacaggcagggcttacggagaatatcgcaaaatgcagc
ggtgaggaaaagaagctgtatgagaacgctgttatgaatttacagcgcatgaagataagc
actatacacagcttttgtttgagtatgctgtcagaacagccttttgaagctgacctgcat
ttgggattaaaacttgccgaggacggtgaaacaaagcaggcacaggctgactttttcgag
agatattaccgcacaaatggtgcgaacatagaagatttcggctttctgaacagcaatcaa
tataagctcagagacagccgtgtgaaaaactttcttatggaaacatttcttgagtgtgct
gaatacagagatgttgagtttgttagggataaaagctatgacagtgtgacatttgacacc
ataaataagcttgcctataaagaaatgtgtaactatagggatagtcttgtgcgtgcattc
tataatggtgctttgggtggaaaatacgaagatatagcaggttttcttgttggtgatgtg
acaaagttttttcctgataatatgaatgtctacgacccaaagtataattatgtaaaagtc
tgcgctaatcttaaagcttgcaaaaagttccttgagccttttaataagactaaaattaag
aaagatcatccaaagagcaatgagaacatggctattttcagcccaagtgggtttgataat
gtaaagaaagaaaatgcactatattccctcaacaagacggcaacatatatagagcaggct
gtgaaggcttatcaggagagtgaagacggggagaacgtttcaaatgacgggcttttgtat
cacactcacgagcttctcaaaaacagcagtgaggcaagagcgtttttcaaagacaagtat
tcctgcatttatatagacgagtttcaggacactgacgttatgcagactgaacttctcctg
tatctttgcgctgacgacagcaatcttgtagcaggcggtgatatatggcaatgcccgctc
cgtgacggtgcgctgtttgcggtgggcgaccctaaacagtctatctacggcttccgtgac
gccgatatcaggctttataacaaaatgaaagccaaattccagaacaataacgagaaaaac
tgcgagtttttctcacttgattacaacttccgctctgatgagcagcttatagcttgggta
aatgaaaagttccagcctgaaataaacggcaaatatggtatgacgtacagcgatatgata
tcaaaggctgataagcctgcggctgtttccgacgatgttatcagaggggcgtattttgtc
aaagatccaggtgctgaaagtgtggctaagataatttcagacctagtgaaggtcggaaag
atattcgacaagggtgtggaaagacctataaaatacagtgattttcttctgcttctttgg
aacacaactcaaatggagttttattcaatggtcttgacagatcgtggcataccatacaca
atgtggggcaaacgtcctcaaaaaaacagtctggtgctgaaaagatttattgctcttgca
gagttcgtttttgaaagctacagccctaccgcaaaggaaaaggcttattctatcctttgg
agatgtaggcctgacagcatcgattttgaagacgctgaaattgacgtagacgattatgaa
caaaactgtgaaagcaatgacgccacgcttgttgcagtaaaggcgtctgccgatactgtc
aatgagcctatagcgaagctatataagatacttgattttcctgagcttcttttcgataat
accagcaacagagaatatgagctttcaaatcttatctatcttcttgaaaagtgggaaaag
caggattttgcaggaagcggcgagcttatggacatgatgaaaaacgagctttctgtgctg
aaagaaaaagagcttatccttgacagcagtgagcagaactgcgtaaggctcatgaatctt
cataaggcaaagggtcttgaggggaatatcgttattatggcggaggctaaaaatcataaa
ttcagcggtggaaagtacaccgaccttgtggctaaaagacaggtctatgtacctttgaaa
acaagcgattattcatatatggactatctgacattctaccctaatgaaaggaagcaggca
gaggataaatattttggcgaacagctcaggcttgaatatgttgcggccacaagagcaaag
caggcttttatatttgtgtatacttttgaacggaaaaaacctgtgatcgacaaacttaca
atgagcaaaataggcagagaattgccgcagataaacaatgccacagcgcaaagtgctgtg
caggcggcgcagataaacgtcaaggatatattcgacgaggtgaacaacagccgaaatgct
tttgatgaaagcgttaaaaagctcagtgagaaatatgttagcaaaatcactcctagccac
cttgaggacggcaaaaaagtcactataccaagtggagtggagaaactgtcttatgaacgt
ccaaagggcatagatatcggtcatatggtacatcgtgcctttgagcttgcggtgaatatg
cgtgggaagctgtttccgtataacgaaacgccacagcagaatgagctaattcagaagatt
gtcagcagagcgtatctcgactttgaggacgagtgcagttcgcaggattctgagagcttt
tataaggactatatcaactatcagctgcacagctttttgaaagataaggatatcgaaaaa
ttgctcaaaactgcgcaggcggtgtatacagagcttccattctacagtatggacggcaat
gaatacagcaacggagttatggatcttgtgcttaaaatgtcagacaaaagctttatcata
atcgactataagaccaacatacaggaagaagccgacagaaagctttttgaggagagaatt
ttaaagacatatcgttcacagcttgatttctacgaaaagatactcagaaaaatgctctcg
ctcagtgaggaaactgaggtggagtgccatatttactttatgaatgacgataaatatatg
aaaaactag
DBGET
integrated database retrieval system
