Ruminococcus bicirculans (ex Wegman et al. 2014): RBI_I01043
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Entry
RBI_I01043 CDS
T03158
Symbol
ispH
Name
(GenBank) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
KO
K02945
small subunit ribosomal protein S1
K03527
4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:
1.17.7.4
]
Organism
rus
Ruminococcus bicirculans (ex Wegman et al. 2014)
Pathway
rus00900
Terpenoid backbone biosynthesis
rus01100
Metabolic pathways
rus01110
Biosynthesis of secondary metabolites
rus03010
Ribosome
Brite
KEGG Orthology (KO) [BR:
rus00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00900 Terpenoid backbone biosynthesis
RBI_I01043 (ispH)
09120 Genetic Information Processing
09122 Translation
03010 Ribosome
RBI_I01043 (ispH)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03011 Ribosome [BR:
rus03011
]
RBI_I01043 (ispH)
Enzymes [BR:
rus01000
]
1. Oxidoreductases
1.17 Acting on CH or CH2 groups
1.17.7 With an iron-sulfur protein as acceptor
1.17.7.4 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase
RBI_I01043 (ispH)
Ribosome [BR:
rus03011
]
Ribosomal proteins
Mitochondria/ Chloroplast
Small subunit
RBI_I01043 (ispH)
Bacteria
RBI_I01043 (ispH)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LYTB
S1
S1_RRP5
S1_2
Spt6_S1
OB_RRP5_4th
DUF7258
FrsA-like
Motif
Other DBs
NCBI-ProteinID:
CCO04757
UniProt:
A0AAP3QZ83
LinkDB
All DBs
Position
I:1174814..1176772
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AA seq
652 aa
AA seq
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MLTKCKICVAKTAGFCFGVDRAVKIVYNELDNRNNVVTLGPIIHNPNVVSDLEAKGVYST
DVDKVTKDQTVVIRSHGVGLDVYEKLAKVGAEVIDATCPFVARIHKIAAEKSGEGYVILI
AGDEAHPEIMGIRGHCSGESYVFSSCDDFENLVKEKDFSSKKVAILAQTTYNKNMWRKCE
ELFERYLPEAVVYNTICSATSERQKEAAELAKAADIMIIVGGLHSSNTHKLKAICDEYCK
CWLVEDAEGLRACDIDLSGAKFIGISAGASTPAYIIKEVQQTMSEMLNNVDEEFNFEEEL
EKTLKKIHTGMKVEGVVTDINNGEVAVDIGTKHTGYIPASELTDDPTKKPEDIVKVGDKI
DLIVLKTNDQEGIVTLSKKKVDAVLGFQKIVEAKEADATLTGTVTNVVKGGVLVSANGVK
VFIPASQAAPRRDFDLNDLLKQSVSFKILEVNEAKQRAVGSIRAVAREERAAAQAKFFET
AQIGSEVEGTVKSITDYGVFVDLGGVDGLIRRMDLSWNRIKHPSDVVSVGDKITVTIKDI
DSETKKVSLTYKKASENPWEIFKANYEVGQVVKATVVSITSFGAFAQIIDGIDGLIHISQ
IANQRVNNVADILSVGQVVDCQITEIDLDKKRISLSMRALLPADDEASEDAE
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgttaacaaagtgtaaaatttgcgttgcaaagaccgcaggtttctgttttggtgtagac
agagccgtaaaaatagtgtataatgaattagataaccgaaataatgttgtaacgttaggc
ccaatcattcacaatccaaacgtagtttctgaccttgaagcaaaaggagtttactccacc
gatgtggataaggtcacgaaagaccagacagttgttatcagatcccacggagttggactg
gacgtgtatgaaaagcttgcaaaggtaggtgcggaggtaattgacgctacctgtcccttt
gtggcaaggatacacaagatagcagccgaaaaatcgggcgagggatacgttattcttatc
gcaggtgatgaggctcacccggaaataatgggtataagaggtcattgcagcggagagagt
tatgtgttcagttcatgtgacgattttgaaaatttggtgaaagagaaagatttttcgtca
aaaaaggttgcaattctggctcagacaacgtataataagaatatgtggagaaagtgcgaa
gagctttttgagaggtatctgcctgaggctgtggtgtataacaccatatgcagtgccact
tctgaaagacagaaggaggcggcggagcttgcgaaggctgccgacataatgataatagtc
ggagggctgcacagctccaatactcacaagcttaaagccatatgcgatgaatattgcaaa
tgttggcttgtggaggacgccgaaggactgagggcatgtgatattgacttatcaggtgca
aaatttatcgggatttctgctggtgcatcgacgccggcttatataatcaaggaggtacaa
cagaccatgagtgaaatgttgaacaatgttgacgaagaatttaattttgaggaggaactg
gaaaagactctgaaaaaaatacatacgggaatgaaggttgagggcgttgtcaccgatatc
aataacggtgaagtagccgtagatatcggaacaaagcacacaggctatattcctgcatct
gaacttacagatgatcctactaagaagccagaggatatcgtaaaggtaggcgacaagatc
gatctgatcgttcttaagacaaatgaccaggagggtatcgttacactttctaagaagaag
gttgacgcagttcttggtttccagaagatagttgaggctaaggaagctgacgctacactt
acaggtacagttacaaacgttgttaagggcggtgtactcgtatcagctaacggtgttaag
gtatttatccctgcttcacaggcagctccaagaagagatttcgatcttaacgatctgctc
aagcagtcagtaagcttcaagatccttgaggtaaacgaggctaagcagagagcagttggt
tctatccgtgcagtagcaagagaggaaagagcagcagctcaggctaagttctttgagaca
gctcagatcggttctgaggtagagggtacagttaagtctatcacagattacggcgtattc
gtagatctcggtggtgttgacggccttattagaagaatggatctttcttggaacaggatc
aagcacccttcagacgttgtttccgttggcgataagatcactgttactatcaaggatatc
gacagcgaaacaaagaaggtttcattgacatataagaaggcttctgagaatccatgggag
atcttcaaggctaattatgaggtaggtcaggtagttaaggctactgttgtttctatcaca
agctttggtgcttttgcacagatcattgacggtatcgacggtcttatccatatctctcag
atcgctaaccagagagtaaacaatgttgcagatatcctttctgtaggtcaggtagttgat
tgccagatcacagagatcgatctcgacaagaagaggatcagcctgtctatgagagctttg
cttcctgctgatgacgaggcttctgaggacgctgaataa
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