Ruminococcus bicirculans (ex Wegman et al. 2014): RBI_I01138
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Entry
RBI_I01138 CDS
T03158
Symbol
murD
Name
(GenBank) UDP-N-acetylmuramoylalanine--D-glutamate ligase
KO
K01925
UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:
6.3.2.9
]
Organism
rus
Ruminococcus bicirculans (ex Wegman et al. 2014)
Pathway
rus00470
D-Amino acid metabolism
rus00550
Peptidoglycan biosynthesis
rus01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
rus00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
RBI_I01138 (murD)
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
RBI_I01138 (murD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
rus01011
]
RBI_I01138 (murD)
Enzymes [BR:
rus01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.9 UDP-N-acetylmuramoyl-L-alanine---D-glutamate ligase
RBI_I01138 (murD)
Peptidoglycan biosynthesis and degradation proteins [BR:
rus01011
]
Precursor biosynthesis
Amino acid ligase
RBI_I01138 (murD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mur_ligase_M
Mur_ligase_C
MurD-like_N
Shikimate_DH
MurD_N
LemA
IHHNV_capsid
Motif
Other DBs
NCBI-ProteinID:
CCO04851
UniProt:
A0AAP3QJY5
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All DBs
Position
I:1281967..1283358
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AA seq
463 aa
AA seq
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MTKAQRYFMEIKDKRVAFIGTGVSHLELIKLFLSKGIRCVVCDKKTEDEFDELIYEELSA
KGCEFSLGEHYLDIIFNCDIVFRTPGMYYNDETITKARKAGVAITSEMETFFDLCPCKIY
GVTGSDGKTTTTTLISEMLKAEGKRVHIGGNIGKALLPIVETMSDSDVAVVELSSFQLIS
MRQSPNVAAITNITPNHLNVHGTMEEYISAKANLIAHQNGYSRTVLNEDNEETIKLADLV
RGKLVTFSLKHPVQTGAYLNDDGMLCYTEKGRTTEIVHKDDIRIPGIHNVANYLTAIAAV
WGEVSIQSIVQVAKNFGGVEHRIEFVREIDGVKWYNDSIATSPTRVIAGLNSFNQKLIVI
AGGYDKKIPFEPLAEPVNKNVKILILLGATADKIEKAVTESPLYPESGLKIVRVKTLEEA
VLTAQKMAEKGDVVTLSPACASFDLYPNFEARGRHFKRLVNEL
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaagcacaaagatatttcatggaaataaaagataagagagtagcgttcataggc
acgggcgtaagtcaccttgagcttataaagctttttctctcaaagggcataagatgcgtt
gtctgcgacaaaaagacagaggacgaatttgatgagcttatctatgaggagctttccgca
aagggctgtgagttctcattgggcgagcattatcttgatatcatcttcaactgcgatata
gttttcagaacacctggtatgtactataatgatgaaactatcacaaaggcaagaaaagca
ggcgttgccattacatcagaaatggaaactttctttgacctctgcccatgcaagatatac
ggcgtaacaggttcagacggaaagactactactactacccttatcagcgaaatgctcaaa
gccgagggcaagcgtgtccatatcggcggaaatatcggcaaggctcttctgcctatagtt
gaaacaatgtcagacagcgatgttgcagtagttgagctttcaagcttccagctaatctca
atgagacagtcgccaaacgttgccgcaatcacaaacatcactccaaaccacctgaacgtt
cacggaacaatggaggagtatatcagtgcaaaggccaaccttatcgctcatcagaacgga
tactcaagaactgtcctcaatgaggataacgaggaaacaataaagcttgcagacctcgta
agaggaaagcttgtcacattctcccttaagcaccctgttcagacaggcgcatatcttaat
gacgacggtatgctttgctacacggaaaagggcagaactacagagatagtgcacaaggac
gatataaggatacctggtatccacaacgttgcgaactatctcacagctatcgccgcagta
tggggcgaggtatctatccagagcatagttcaggtagcaaagaacttcggtggcgttgag
catagaattgaatttgtaagagagatagacggcgttaagtggtataacgattctatcgca
acaagccctacaagagttatcgcaggacttaattcattcaatcagaagcttattgttatc
gcaggcggctatgacaagaagataccttttgagcctcttgccgagcctgtgaacaagaac
gtaaagatactcattcttcttggcgcgacagcagacaagatagaaaaggctgttacagaa
agcccgctctatcctgaaagcggtctgaaaatagtaagagtaaagacacttgaagaagca
gtccttacagcacagaaaatggctgaaaagggcgatgttgtcacactttcaccagcctgt
gcaagctttgacctctatcctaactttgaggcaagaggcagacatttcaagcgacttgtg
aacgaactctaa
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