Ruminococcus bicirculans (ex Wegman et al. 2014): RBI_I01148
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Entry
RBI_I01148 CDS
T03158
Symbol
dnaE
Name
(GenBank) DNA Polymerase III E
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rus
Ruminococcus bicirculans (ex Wegman et al. 2014)
Pathway
rus03030
DNA replication
rus03430
Mismatch repair
rus03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rus00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RBI_I01148 (dnaE)
03430 Mismatch repair
RBI_I01148 (dnaE)
03440 Homologous recombination
RBI_I01148 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rus03032
]
RBI_I01148 (dnaE)
03400 DNA repair and recombination proteins [BR:
rus03400
]
RBI_I01148 (dnaE)
Enzymes [BR:
rus01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RBI_I01148 (dnaE)
DNA replication proteins [BR:
rus03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RBI_I01148 (dnaE)
DNA repair and recombination proteins [BR:
rus03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RBI_I01148 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
PHP
DNA_pol3_finger
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
CCO04861
UniProt:
W0U5W3
LinkDB
All DBs
Position
I:1292049..1295519
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AA seq
1156 aa
AA seq
DB search
MPEFVHLHLHSEYSLLDGACRIKELVLRVKELGQKAVAVTDHGNMFAAVEFYNECLAQGI
KPIIGCEVYVAPRTRFDKLAKIDSSPYHLVLLCENNEGYQNLIKLVSAAYTEGFYSKPRV
DVELLEKYHKGLICLSACLAGEIPRKLTNGDYEGAKQTALKYRDIFGRDNYFIELQNHKF
ADQQRILPMLIKLSRETGIPMVCTNDAHYLRRSDANAQRVLMCISTGTTLDDPSRLEFPT
NEFYVKSAEEMAALFPSQPESLENTVKIADRCNVSFEFGKTKLPYFHIDGVSDNEKFLRD
MCMKGLYKRYENPTKEALKRVDYELDVITRMGYTDYYLIVWDFVHYAKTHGIPVGCGRGS
GAGSLCAYCIGITGIDPLKYDLLFERFLNPERVSMPDFDIDFCMEGRQRVIDYVVEKYGS
DHVAQIATFGTLAAKQAVRDVARAMGLPYQTGDMLAKKIPRGQPLKYSIENIPELSSLYR
TDMKIRQLLDIAMSVEGMPRNVSTHAAGVVITKEPVDFYVPLYSRDGQVSTQYTMTVLER
LGLLKIDFLGLRNLTIIDHCRKQVIETHPDFDLEKIPLDDKKVYEMLSQGKTEGVFQFES
AGMTATVMKLRPERLEDLIAVISLYRPGPMDSIPTYIRNRHEPDRIVYKHPLLKGILEVT
YGCIVYQEQVMQIFRTLAGYSYGRADIVRRAMAKKKAAVLENERKAFIYGEKGQCCGAVA
NGVPANVANEIFDEMTSFASYAFNKSHAAAYATIAYQTAYLKCHFYKEYVAALMTITLLD
STDKLYGYIADVGKSGVKILPLDINKSESGFVAEPEGIRFALLAVKSLGEGAIDRIVSER
KSGGAFRSLQDFCTRVSGRDIHLRTVEALIKSGAFDGFGYTRREHLNACEDIMKSVTRSD
GSVIEGQLDLFGMGSALPMEKKIERCGEFDEQQLLEFEHEALGMYISAHPIDRFECVISA
TRCVTSAQLIKACTDEGGMADKRFADGAEVDYAGMVRGRKMLKTKKGDMMCFVELEDKFG
TLEIVVFPSVFQTMGGLIKDRALLHVKGKISCKEEEEPKILADMLEPVDRFCSLQLQRDI
CVRLVSRDAEGIKAVRTIAEKYRAQTGSKFAVFFSDIRKMTGIKSVHAVKMCPELLVELE
NRLGAENVVFMDRKGE
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgcctgagtttgtacatctacatcttcatagtgaatattcgctccttgacggcgcctgc
cgtatcaaggagcttgttttgcgtgtaaaggagcttggacagaaagctgttgcggtcaca
gaccatggaaatatgttcgcggcggtggagttttacaacgaatgtcttgctcagggcata
aagcctataataggctgtgaggtgtatgttgcaccaagaacacgatttgacaagctagcg
aagatagacagttcgccttaccaccttgtgcttctgtgcgaaaacaatgagggttatcaa
aatcttataaagcttgtgtcggcggcatatacagagggcttttacagcaaaccgagagta
gatgttgaattgcttgaaaaataccacaaggggcttatctgcttgtcggcttgtcttgcg
ggtgagatacctagaaagctgacaaatggcgattatgagggcgcgaagcagactgctctt
aaatatcgtgatatatttggcagggataattactttatagagcttcaaaatcataagttt
gcagaccagcagagaatattgcctatgcttataaagctttcacgagaaacaggaataccg
atggtctgcactaatgacgcacactatctcagacgttcagacgctaatgcgcaacgtgtg
ctaatgtgtatctcaacaggcacgacactagacgacccaagcaggcttgaatttccgaca
aacgagttttatgtaaagtcagcagaagaaatggcggcgctttttccctctcagcctgag
tcgctggagaatacagtaaagatagctgacagatgtaatgtaagctttgagtttggcaaa
acaaagcttccgtatttccatatagacggtgtttcagataatgaaaagtttcttcgtgat
atgtgcatgaaagggctttataaacgttatgaaaatcctacaaaagaggctttgaaacgt
gttgactatgagcttgacgttataacgagaatgggatatactgactattatcttatagta
tgggattttgttcactatgcaaagacccacggcatacctgttggctgcggacgtggttca
ggcgcaggaagtctgtgtgcttattgcataggcataacgggtatagacccgctgaaatat
gacctgctttttgaacgttttctcaatcccgaaagagtttccatgcctgactttgatata
gatttctgcatggaaggcagacagcgtgttattgattacgttgtggagaaatacggctct
gaccatgtggcgcagattgcgacctttggcacgcttgcggcaaagcaggcagtgagagat
gtggcaagagcaatgggtctgccttatcagaccggagatatgcttgcaaagaaaatacct
agaggtcagccacttaaatattccatagagaatatacctgagcttagttccctttatagg
actgatatgaagatacgacaacttcttgatattgccatgagcgtggagggtatgccacga
aatgtatctacccacgcagcaggcgttgttatcacaaaagagccggttgacttttacgtt
cctctctattctcgtgacggacaagtttccacacagtatacaatgacagtgcttgaacga
ttgggacttcttaaaattgattttctcggactccgcaaccttaccattatagaccactgc
cgaaagcaggtgatagaaactcaccctgattttgacttggagaagatacctcttgatgac
aagaaggtatatgaaatgctgtcacagggcaaaacggagggcgttttccagtttgaaagt
gcaggaatgactgcaactgtcatgaagcttcgccctgaaagattagaggaccttatcgct
gttatctccctttaccgcccaggacctatggactcgatcccaacatatatccgaaaccgc
catgaacctgacaggatagtgtataagcacccattgctcaaaggcatacttgaagtgaca
tacggctgtatagtttatcaggagcaggtaatgcaaatattccgcactcttgcaggatat
tcatacggcagagcggatatcgtaaggcgagcaatggcaaaaaagaaagcggctgttttg
gaaaacgagcgaaaagcgtttatctacggtgagaaagggcagtgctgtggtgcagtggca
aacggtgtgcccgctaatgttgccaatgagatatttgacgaaatgacctcttttgcaagc
tatgcctttaacaaatcccatgcggcggcttatgcaactatcgcatatcagacagcgtat
ttaaaatgtcatttctataaggaatacgtggcggcacttatgactatcacgcttcttgac
agcaccgataagctttacggatatattgcagatgttggcaaaagtggcgttaaaattttg
ccgctggatataaataagagcgaaagcggttttgtggcagagcctgagggaatacgcttt
gcacttcttgcggttaagtcgcttggtgagggggctatcgacaggatagtttctgagcgt
aaatcaggtggagcgtttcgttcgcttcaagacttttgtacacgagtttcgggcagagat
atccacctgagaacagtggaagcacttataaagagtggagcttttgacggttttggatac
accagacgtgaacatctcaatgcttgcgaggacataatgaaaagcgtaactcggtcagac
ggaagtgtgattgagggtcaacttgacttgtttggcatgggttctgctttgccaatggaa
aagaagatagaacgctgcggtgagtttgacgaacagcagcttcttgaatttgagcatgaa
gctcttggtatgtatatatcagcccaccctatagaccgctttgagtgtgtgatttcagcc
acaaggtgcgtcacctctgcacagctcataaaagcctgtacagacgagggcggaatggct
gataaacgtttcgctgatggggcggaagtagattatgcaggaatggtcaggggcagaaaa
atgctaaagaccaaaaaaggcgatatgatgtgttttgtggagcttgaagacaagttcgga
acgttagagatagtggtttttccgtcagtttttcaaactatgggaggccttataaaagac
agagcgcttctacacgtcaaaggcaagatatcatgcaaagaggaagaagaacctaagata
cttgcggatatgcttgagcctgtcgatagattttgctcattacagcttcaaagggatatt
tgcgtaaggcttgtttcaagagatgcagagggcataaaggctgttagaactatagccgag
aaatacagagcacagactggttcaaagtttgcggtatttttcagcgatatacgcaaaatg
acaggcataaagtctgttcatgctgtgaaaatgtgtcctgaactgcttgtcgaacttgaa
aacagactgggtgctgaaaacgtggtatttatggacagaaaaggagaataa
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