Ruminococcus bicirculans (ex Wegman et al. 2014): RBI_I01155
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Entry
RBI_I01155 CDS
T03158
Symbol
pnp
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
rus
Ruminococcus bicirculans (ex Wegman et al. 2014)
Pathway
rus03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rus00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RBI_I01155 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rus03019
]
RBI_I01155 (pnp)
03016 Transfer RNA biogenesis [BR:
rus03016
]
RBI_I01155 (pnp)
Enzymes [BR:
rus01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
RBI_I01155 (pnp)
Messenger RNA biogenesis [BR:
rus03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
RBI_I01155 (pnp)
Transfer RNA biogenesis [BR:
rus03016
]
Prokaryotic type
tRNA degradation factors
RBI_I01155 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
PNPase
KH_1
KH-I_KHDC4-BBP
S1_RRP5
DNA_pol3_tau_5
SPATA25
Motif
Other DBs
NCBI-ProteinID:
CCO04868
UniProt:
A0AAP3QLB1
LinkDB
All DBs
Position
I:1301124..1303238
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AA seq
704 aa
AA seq
DB search
MFENFKTFETTYAGRPVVVETGKTCGLANGSCWVRYGETVVMANVTASAKPREGVDFFPL
SVDFEEKMYAVGRIPGSFTKREGKASDKAILASRCVDRPIRPLFPKDMRNDVSVVMTVLS
VDPDNSPEITGMIATSIALSISDIPWNGPVASINVGYVDGELVLNPTLEQRAKNRLNLTV
AGSAEKIVMIEAGADQIPDDLMLKAIMTGHEEIKKMVAFINDIKAQIGKPKFEFESMEVD
HDLFDAVEAMVGEQVKVALDTDDKNVRDARLQPIIDAVHEKFDEQCEDNTAVLDEVMYKL
QKKIVRNWLYEGKRVDGRGIDEIRPLAAEVGVLPRVHGSGIFTRGQTQVMTIATLGPVSD
AQKLDGIDEETSKRYMHQYNFPSYSVGETRPSRGPGRREIGHGALAERALVPVIPSVEEF
PYAIRCVSEVLSSNGSTSQGSICGSTLALMDAGVPIKEPVAGISCGLITKEDGSWMTMVD
IQGLEDFYGDMDFKVGGTKNGITAIQVDIKVDGLTPEIIASAFEKTRKARMYILDEIMLK
AIPAPRAEVSKWAPKMLATKVPVDKIREVIGSGGKVIQKISAECDVKIDISEDGSVFVSG
IDKEKAEQAINIINTIANDPEIGAIYRGKVVKIMNFGAFVEIAPGKDGLVHISKLDKSRV
EKVEDVVSVGDEIVVKVMEIDDQGRINLSRKDALADIEAKKNAK
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgtttgagaatttcaaaacttttgaaacgacatatgcaggcagacctgtagtagttgaa
acaggtaagacctgcggacttgctaacggctcttgctgggtaagatacggtgaaacggtt
gtaatggctaacgttacagcttccgcaaagccaagagagggtgttgactttttcccactt
tcagttgactttgaggagaaaatgtatgcagtaggcagaataccaggttctttcacaaag
agagaaggcaaggcttctgacaaggctatccttgcttcaagatgtgtagacagacctatc
agacctcttttcccaaaggatatgagaaatgacgtttcagttgttatgacagttctttct
gttgaccctgacaactcacctgagatcacaggtatgatagctacatctattgcactttct
atctctgatattccatggaacggcccagttgcatctatcaacgtaggttacgttgacggc
gaacttgttcttaatccaactcttgagcagagagctaagaacagacttaaccttacagtt
gcaggctctgctgaaaagatagtaatgatcgaggcaggtgcagaccagatacctgacgat
cttatgctcaaggctatcatgaccggtcatgaagagataaagaaaatggtagctttcatc
aacgatatcaaggctcagatcggtaaacctaagtttgagtttgagtcaatggaagttgac
cacgatctgttcgacgctgttgaagcaatggtaggcgagcaggtaaaggtcgctcttgat
acagatgataagaatgtaagagacgcaagactccagccaataatcgacgctgttcatgag
aagttcgacgagcagtgcgaggataacacagctgttcttgacgaagttatgtataagctc
cagaagaagatagttagaaactggctctatgagggcaagcgtgttgacggcagaggtatc
gacgagataagaccacttgctgctgaagttggcgttctcccaagagtacacggttcaggt
atcttcacaagaggtcagacacaggtaatgactatcgcaacacttggccctgtttcagac
gctcagaaacttgacggtatcgacgaggaaacttccaagagatatatgcaccagtacaat
ttcccttcatattctgttggtgaaacaagaccttcaagaggtccgggaagaagagagata
ggtcacggcgcacttgctgagagagcactcgttccggttatcccttctgttgaagagttc
ccatatgctatcagatgcgtatctgaggtgctttcttcaaacggttctacatcacagggt
tctatctgtggttctacacttgcacttatggacgcaggcgttcctatcaaagagcctgtt
gctggtatctcatgcggtcttatcactaaggaggacggcagctggatgactatggtagac
attcagggccttgaggacttctacggcgatatggactttaaggtaggcggtacaaagaac
ggtatcacagctattcaggtggatatcaaggtcgacggtctgacacctgagataatcgca
agtgcttttgaaaagacaagaaaagcaagaatgtatattcttgatgagataatgctcaag
gctatccctgctcctcgtgctgaggtaagcaagtgggcacctaagatgctggcaacaaag
gtaccggttgacaagatcagagaagttatcggttcaggcggaaaggtaattcagaagatc
tctgctgagtgcgacgttaagatagacatatctgaggacggtagcgtattcgtttcaggt
atcgacaaggaaaaggctgaacaggcaatcaatatcatcaatactatcgctaatgaccct
gagataggtgctatctatagaggtaaggtagtaaagatcatgaactttggtgctttcgtt
gaaatagctcctggtaaggacggtttggtacacatttctaagcttgacaaatcaagagta
gaaaaggtcgaggacgttgtttcagttggcgacgagatcgttgttaaggtaatggagatc
gacgatcagggcaggatcaatctttcaagaaaagacgctcttgctgatatcgaagctaag
aagaacgctaagtaa
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